Variant report

Variant	rs7109341
Chromosome Location	chr11:84403409-84403410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84398979..84400532-chr11:84402254..84404090,2	MCF-7	breast:
2	chr11:84397361..84400181-chr11:84400344..84403864,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11234125	0.93[CHB][hapmap];0.93[CHD][hapmap];0.96[ASN][1000 genomes]
rs11234135	1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[ASN][1000 genomes]
rs11234137	0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs11602539	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11826250	0.85[CHB][hapmap];0.82[CHD][hapmap]
rs12270207	0.92[CHB][hapmap];0.94[ASN][1000 genomes]
rs12294173	0.93[CHB][hapmap];0.93[CHD][hapmap];0.97[ASN][1000 genomes]
rs1789175	0.80[CHB][hapmap]
rs1940092	0.82[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1943706	0.83[CHD][hapmap]
rs1943707	0.85[CHB][hapmap]
rs1943712	0.80[CHB][hapmap]
rs2000816	0.85[CHB][hapmap]
rs2212490	0.87[EUR][1000 genomes]
rs4594021	0.85[CHB][hapmap];0.82[CHD][hapmap]
rs55890442	0.88[ASN][1000 genomes]
rs7120512	0.80[CHB][hapmap]
rs7925680	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs7941876	0.90[ASN][1000 genomes]
rs7942057	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv917176	chr11:84157998-84419488	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv555612	chr11:84222437-84415122	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1037047	chr11:84290572-84414586	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv541106	chr11:84290572-84414586	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1049964	chr11:84315563-84578721	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv555615	chr11:84334144-84541403	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1050367	chr11:84355133-84476542	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv541107	chr11:84355133-84476542	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1043987	chr11:84355133-84516193	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv541108	chr11:84355133-84516193	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1051456	chr11:84355133-84544954	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv555617	chr11:84394622-84493877	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84399400-84404400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:84402000-84404600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:84402800-84403600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:84402800-84403600	Enhancers	Fetal Kidney	kidney
5	chr11:84402800-84403800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr11:84402800-84403800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr11:84402800-84404200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:84402800-84404400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:84403000-84403600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr11:84403000-84403600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:84403000-84404600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr11:84403200-84403800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr11:84403200-84404400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr11:84403200-84406000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:84403400-84404600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:84403400-84404800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr11:84403400-84405200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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