Variant report

Variant	rs710941
Chromosome Location	chr7:5673429-5673430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:5663770..5665922-chr7:5672442..5674114,2	K562	blood:
2	chr7:5673316..5675722-chr7:5676107..5679530,3	K562	blood:
3	chr7:5661377..5664356-chr7:5673284..5675740,2	MCF-7	breast:
4	chr7:5663770..5665768-chr7:5672068..5673942,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs28417882	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61203027	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs852375	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852376	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs852397	0.85[AMR][1000 genomes]
rs852402	0.85[AMR][1000 genomes]
rs852409	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs852410	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs852415	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs852420	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852421	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852441	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs852450	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852457	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs852461	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852468	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852472	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs852489	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs852516	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs860425	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869165	chr7:4889618-5799719	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	352 gene(s)	inside rSNPs	diseases
2	nsv530979	chr7:5101631-5864814	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
3	nsv530981	chr7:5157150-5920006	Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	348 gene(s)	inside rSNPs	diseases
4	esv1814049	chr7:5314993-5675131	Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	333 gene(s)	inside rSNPs	diseases
5	nsv530983	chr7:5370746-6070852	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	368 gene(s)	inside rSNPs	diseases
6	nsv916391	chr7:5417945-5889565	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
7	nsv830890	chr7:5464933-5705158	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
8	nsv533108	chr7:5488018-6316581	Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	390 gene(s)	inside rSNPs	diseases
9	nsv1025434	chr7:5537571-5705283	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
10	nsv482449	chr7:5557585-5743673	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases
11	nsv1033556	chr7:5565080-6186815	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
12	nsv538710	chr7:5565080-6186815	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
13	nsv887415	chr7:5584934-5675305	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
14	nsv887416	chr7:5584934-5695259	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
15	nsv530467	chr7:5617816-5815082	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
16	nsv1017612	chr7:5629728-5819144	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
17	nsv1021989	chr7:5629728-6186815	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
18	nsv1034883	chr7:5651680-5696147	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv887417	chr7:5667645-5760860	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:5660600-5693800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:5661800-5673600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:5664200-5673600	Weak transcription	Colonic Mucosa	Colon
4	chr7:5666000-5673600	Strong transcription	Fetal Intestine Small	intestine
5	chr7:5666200-5674200	Weak transcription	Primary B cells from cord blood	blood
6	chr7:5666800-5673600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:5667000-5674200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:5668600-5675400	Weak transcription	Hela-S3	cervix
9	chr7:5669400-5674200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr7:5669600-5673800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:5669600-5674000	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr7:5669600-5674000	Enhancers	Brain Anterior Caudate	brain
13	chr7:5669600-5675800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:5669800-5677600	Genic enhancers	Fetal Stomach	stomach
15	chr7:5670000-5673800	Enhancers	Brain Hippocampus Middle	brain
16	chr7:5670400-5674200	Weak transcription	A549	lung
17	chr7:5670400-5675800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr7:5670800-5674800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
19	chr7:5671200-5674000	Weak transcription	NHEK	skin
20	chr7:5671600-5673800	Weak transcription	Right Ventricle	heart
21	chr7:5671600-5674000	Weak transcription	HMEC	breast
22	chr7:5671600-5674200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr7:5671800-5673600	Weak transcription	Right Atrium	heart
24	chr7:5671800-5674200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr7:5671800-5674200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:5671800-5675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr7:5671800-5682800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr7:5672000-5673600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr7:5672000-5674200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr7:5672000-5675200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr7:5672000-5681200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr7:5672200-5674000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:5672200-5674000	Weak transcription	Esophagus	oesophagus
34	chr7:5672400-5673600	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr7:5672400-5675200	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr7:5672600-5673600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr7:5672600-5673600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:5672600-5673600	Weak transcription	Liver	Liver
39	chr7:5672600-5673600	Weak transcription	Fetal Intestine Large	intestine
40	chr7:5672600-5673600	Weak transcription	Thymus	Thymus
41	chr7:5672600-5673800	Weak transcription	Primary T cells from cord blood	blood
42	chr7:5672600-5673800	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr7:5672600-5673800	Enhancers	Fetal Muscle Trunk	muscle
44	chr7:5672600-5673800	Enhancers	Fetal Muscle Leg	muscle
45	chr7:5672600-5674000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr7:5672600-5674000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr7:5672600-5674000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr7:5672600-5674000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr7:5672600-5674200	Weak transcription	Gastric	stomach
50	chr7:5672600-5674200	Weak transcription	Lung	lung

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