Variant report

Variant	rs7109443
Chromosome Location	chr11:47782197-47782198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47775752..47779558-chr11:47781673..47786599,7	K562	blood:
2	chr11:47777399..47779462-chr11:47781256..47782859,2	MCF-7	breast:
3	chr11:47777730..47779559-chr11:47781286..47784201,3	K562	blood:

Variant related genes	Relation type
ENSG00000109920	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12225433	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	nsv832143	chr11:47700808-47883540	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47737000-47786200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:47737800-47782800	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr11:47737800-47785800	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:47737800-47786000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:47737800-47786200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:47737800-47786200	Strong transcription	Muscle Satellite Cultured Cells	--
7	chr11:47737800-47786400	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:47737800-47786400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:47737800-47786400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:47737800-47786400	Strong transcription	Fetal Thymus	thymus
11	chr11:47737800-47786800	Strong transcription	Placenta	Placenta
12	chr11:47738000-47786200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:47738000-47786400	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:47738000-47786400	Strong transcription	Primary B cells from peripheral blood	blood
15	chr11:47738000-47786800	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:47738200-47786400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:47738400-47786200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:47738600-47785800	Strong transcription	Dnd41	blood
19	chr11:47746200-47786000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:47746400-47786200	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr11:47747400-47786200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:47747600-47786400	Strong transcription	Fetal Intestine Large	intestine
23	chr11:47747800-47786200	Strong transcription	A549	lung
24	chr11:47748000-47786000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:47748600-47786200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:47748600-47786200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:47748800-47786200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:47753400-47786400	Strong transcription	Liver	Liver
29	chr11:47753600-47786400	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr11:47759200-47786200	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:47759400-47785400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:47760600-47783200	Strong transcription	Fetal Lung	lung
33	chr11:47764800-47786200	Strong transcription	HSMM	muscle
34	chr11:47768000-47786600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr11:47769000-47787600	Weak transcription	Stomach Mucosa	stomach
36	chr11:47769600-47786000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:47776000-47787400	Weak transcription	Psoas Muscle	Psoas
38	chr11:47777200-47784000	Strong transcription	Primary B cells from cord blood	blood
39	chr11:47777400-47785200	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:47777400-47786200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr11:47777400-47786200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr11:47777600-47786400	Strong transcription	Brain Cingulate Gyrus	brain
43	chr11:47777600-47786800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:47778000-47786200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:47778000-47786200	Strong transcription	Adipose Nuclei	Adipose
46	chr11:47778000-47786400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:47778400-47786800	Strong transcription	Fetal Muscle Leg	muscle
48	chr11:47778400-47787000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:47778600-47786000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:47778600-47786000	Strong transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links