Variant report

Variant	rs71096080
Chromosome Location	chr12:66609586-66609587
allele	-/TGTG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:66562009..66565017-chr12:66607672..66610931,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155957	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv899216	chr12:66563835-66716844	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv541517	chr12:66576953-66639823	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	n/a
5	esv20613	chr12:66609223-66609834	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv1497497	chr12:66609582-66609586	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:66583800-66623400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:66589600-66623400	Weak transcription	Spleen	Spleen
3	chr12:66592400-66628400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr12:66593400-66613400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr12:66597600-66623400	Weak transcription	Aorta	Aorta
6	chr12:66604000-66620200	Weak transcription	Lung	lung
7	chr12:66604400-66628800	Weak transcription	Right Ventricle	heart
8	chr12:66604800-66610600	Strong transcription	Fetal Lung	lung
9	chr12:66605200-66628800	Weak transcription	Psoas Muscle	Psoas
10	chr12:66605400-66628200	Weak transcription	NHDF-Ad	bronchial
11	chr12:66605600-66611400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:66606000-66610400	Weak transcription	Primary B cells from cord blood	blood
13	chr12:66606200-66609800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr12:66606200-66610600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr12:66606400-66620000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr12:66606800-66611600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr12:66606800-66612400	Weak transcription	Adipose Nuclei	Adipose
18	chr12:66606800-66623000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr12:66606800-66625800	Weak transcription	Fetal Muscle Leg	muscle
20	chr12:66607000-66611200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr12:66607200-66611000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr12:66608000-66611000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr12:66608600-66610000	Enhancers	Fetal Intestine Large	intestine
24	chr12:66608600-66610000	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr12:66608800-66610000	Enhancers	Fetal Intestine Small	intestine
26	chr12:66608800-66628800	Weak transcription	Gastric	stomach
27	chr12:66609000-66609600	Enhancers	HepG2	liver
28	chr12:66609000-66609800	Enhancers	Stomach Mucosa	stomach
29	chr12:66609000-66610000	Enhancers	Duodenum Mucosa	Duodenum
30	chr12:66609000-66610200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr12:66609000-66610400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr12:66609000-66628800	Weak transcription	Left Ventricle	heart
33	chr12:66609200-66610600	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr12:66609200-66610800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr12:66609200-66628800	Weak transcription	Colonic Mucosa	Colon
36	chr12:66609200-66629000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr12:66609400-66612000	Genic enhancers	Primary monocytes fromperipheralblood	blood
38	chr12:66609400-66613400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr12:66609400-66626200	Weak transcription	Small Intestine	intestine

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