Variant report

Variant	rs7110239
Chromosome Location	chr11:34246655-34246656
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34244635..34246968-chr11:34254314..34256180,3	K562	blood:
2	chr11:34244635..34246968-chr11:34254432..34256180,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59804671	1.00[AMR][1000 genomes]
rs60307714	1.00[AMR][1000 genomes]
rs7933336	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1050413	chr11:34237529-34259820	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2762905	chr11:34238653-34256130	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34237200-34255600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:34243600-34247000	Enhancers	HepG2	liver
3	chr11:34243800-34247000	Enhancers	Fetal Stomach	stomach
4	chr11:34243800-34247200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr11:34244000-34247000	Enhancers	Fetal Intestine Small	intestine
6	chr11:34244200-34247000	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:34244400-34246800	Enhancers	Brain Hippocampus Middle	brain
8	chr11:34244400-34247000	Enhancers	Fetal Intestine Large	intestine
9	chr11:34245000-34246800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:34245200-34254600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:34245200-34255400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:34245200-34255600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:34245200-34255800	Weak transcription	HSMMtube	muscle
14	chr11:34245200-34263800	Weak transcription	Right Atrium	heart
15	chr11:34245200-34264200	Weak transcription	Aorta	Aorta
16	chr11:34245400-34247000	Enhancers	Fetal Lung	lung
17	chr11:34245400-34251400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:34245400-34254600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:34245400-34255600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:34245400-34255600	Weak transcription	NHLF	lung
21	chr11:34245600-34246800	Weak transcription	Placenta	Placenta
22	chr11:34245600-34263600	Weak transcription	Right Ventricle	heart
23	chr11:34245800-34246800	Weak transcription	Small Intestine	intestine
24	chr11:34246000-34246800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:34246000-34247800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:34246200-34247800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:34246200-34255600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:34246400-34246800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:34246400-34246800	Enhancers	A549	lung
30	chr11:34246400-34247000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:34246600-34246800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:34246600-34246800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:34246600-34246800	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr11:34246600-34246800	Enhancers	Brain Germinal Matrix	brain

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