Variant report

Variant	rs7110846
Chromosome Location	chr11:107992712-107992713
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:107991820-107992775	GM12878	blood:	n/a	n/a
2	HCFC1	chr11:107992003-107992756	K562	blood:	n/a	n/a
3	POLR2A	chr11:107991922-107992749	PANC-1	pancreas:	n/a	n/a
4	POLR2A	chr11:107991958-107992782	GM12878	blood:	n/a	n/a
5	MAX	chr11:107991925-107993257	K562	blood:	n/a	n/a
6	YY1	chr11:107991973-107992761	GM12878	blood:	n/a	n/a
7	NR2F2	chr11:107991737-107993246	K562	blood:	n/a	n/a
8	E2F6	chr11:107991984-107992957	H1-hESC	embryonic stem cell:	n/a	chr11:107992194-107992203
9	CBX3	chr11:107991639-107992822	K562	blood:	n/a	n/a
10	RFX5	chr11:107991985-107993190	Hela-S3	cervix:	n/a	n/a
11	EP300	chr11:107991790-107992925	ECC-1	luminal epithelium:	n/a	chr11:107992814-107992828
12	POLR2A	chr11:107991880-107992770	GM18951	blood:	n/a	n/a
13	POLR2A	chr11:107991954-107993102	H1-neurons	neurons:	n/a	n/a
14	POLR2A	chr11:107991940-107992833	GM12891	blood:	n/a	n/a
15	MAX	chr11:107991752-107992961	HepG2	liver:	n/a	n/a
16	POLR2A	chr11:107991876-107992816	K562	blood:	n/a	n/a
17	MXI1	chr11:107991995-107993028	GM12878	blood:	n/a	n/a
18	USF2	chr11:107992293-107992776	H1-hESC	embryonic stem cell:	n/a	n/a
19	SIN3AK20	chr11:107992531-107992744	PFSK-1	brain:	n/a	n/a
20	POLR2A	chr11:107991854-107993546	HepG2	liver:	n/a	n/a
21	MBD4	chr11:107992323-107992718	HepG2	liver:	n/a	n/a
22	MYC	chr11:107992532-107992736	HepG2	liver:	n/a	n/a
23	POLR2A	chr11:107991997-107992744	K562	blood:	n/a	n/a
24	E2F6	chr11:107992113-107992834	A549	lung:	n/a	chr11:107992194-107992203
25	MAX	chr11:107991962-107993254	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr11:107991985-107992901	IMR90	lung:	n/a	n/a
27	MXI1	chr11:107991797-107993438	IMR90	lung:	n/a	n/a
28	RCOR1	chr11:107991965-107993163	K562	blood:	n/a	n/a
29	MYC	chr11:107992095-107993347	MCF10A-Er-Src	breast:	n/a	n/a
30	POLR2A	chr11:107991871-107992716	H1-hESC	embryonic stem cell:	n/a	n/a
31	MAX	chr11:107992005-107992966	SK-N-SH	brain:	n/a	n/a
32	MAZ	chr11:107991681-107993139	IMR90	lung:	n/a	n/a
33	SIN3AK20	chr11:107992013-107993084	SK-N-SH	brain:	n/a	n/a
34	POLR2A	chr11:107991605-107992742	HepG2	liver:	n/a	n/a
35	MAZ	chr11:107991981-107992790	GM12878	blood:	n/a	n/a
36	MYC	chr11:107992555-107992803	K562	blood:	n/a	n/a
37	MAX	chr11:107991923-107993064	A549	lung:	n/a	n/a
38	NFIC	chr11:107991780-107992955	ECC-1	luminal epithelium:	n/a	chr11:107992184-107992201 chr11:107992186-107992202 chr11:107992184-107992200 chr11:107992185-107992202
39	E2F6	chr11:107991923-107992858	K562	blood:	n/a	chr11:107992194-107992203
40	HEY1	chr11:107991969-107992796	K562	blood:	n/a	chr11:107992668-107992677 chr11:107992711-107992726
41	MYC	chr11:107992606-107992718	MCF-7	breast:	n/a	n/a
42	POLR2A	chr11:107991901-107992746	Raji	blood:	n/a	n/a
43	BHLHE40	chr11:107991937-107992904	GM12878	blood:	n/a	n/a
44	NFIC	chr11:107991781-107993165	ECC-1	luminal epithelium:	n/a	chr11:107992184-107992201 chr11:107992186-107992202 chr11:107992184-107992200 chr11:107992185-107992202
45	MAX	chr11:107991981-107992948	SK-N-SH	brain:	n/a	n/a
46	USF1	chr11:107992413-107992980	SK-N-SH_RA	brain:	n/a	chr11:107992667-107992678
47	USF1	chr11:107992264-107992943	H1-hESC	embryonic stem cell:	n/a	chr11:107992667-107992678
48	PML	chr11:107991757-107992898	GM12878	blood:	n/a	n/a
49	TAF1	chr11:107992042-107992719	A549	lung:	n/a	n/a
50	POLR2A	chr11:107991805-107992861	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:107879008..107882104-chr11:107991227..107994837,4	K562	blood:
2	chr11:107991856..107992738-chr20:42086425..42086935,2	NB4	blood:
3	chr11:107992260..107994270-chr11:108463431..108465424,2	K562	blood:
4	chr11:107879008..107882817-chr11:107991227..107994837,4	K562	blood:
5	chr11:107992282..107994125-chr11:108092449..108094486,3	K562	blood:

Variant related genes	Relation type
ENSG00000255467	TF binding region
ENSG00000149311	Chromatin interaction
ENSG00000149308	Chromatin interaction
ENSG00000166266	Chromatin interaction
ENSG00000124193	Chromatin interaction
ENSG00000110723	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73559226	0.95[AFR][1000 genomes]
rs9666116	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1039549	chr11:107950572-108034548	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1040522	chr11:107969357-108049672	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107991600-107993400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:107991800-107992800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:107991800-107992800	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr11:107991800-107992800	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr11:107991800-107992800	Active TSS	K562	blood
6	chr11:107991800-107992800	Active TSS	NHEK	skin
7	chr11:107991800-107992800	Active TSS	Osteobl	bone
8	chr11:107991800-107993000	Active TSS	H9 Cell Line	embryonic stem cell
9	chr11:107991800-107993000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:107991800-107993000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:107991800-107993000	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr11:107991800-107993000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr11:107991800-107993000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
14	chr11:107991800-107993000	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr11:107991800-107993000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:107991800-107993000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:107991800-107993000	Active TSS	Brain Cingulate Gyrus	brain
18	chr11:107991800-107993000	Active TSS	Brain Germinal Matrix	brain
19	chr11:107991800-107993000	Active TSS	Brain Substantia Nigra	brain
20	chr11:107991800-107993000	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr11:107991800-107993000	Active TSS	Fetal Brain Female	brain
22	chr11:107991800-107993000	Active TSS	Fetal Kidney	kidney
23	chr11:107991800-107993000	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr11:107991800-107993000	Active TSS	Rectal Smooth Muscle	rectum
25	chr11:107991800-107993000	Active TSS	GM12878-XiMat	blood
26	chr11:107991800-107993000	Active TSS	Hela-S3	cervix
27	chr11:107991800-107993000	Active TSS	HSMM	muscle
28	chr11:107991800-107993000	Active TSS	HSMMtube	muscle
29	chr11:107991800-107993200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr11:107991800-107993200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:107991800-107993200	Active TSS	Brain Angular Gyrus	brain
32	chr11:107991800-107993200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:107991800-107993400	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr11:107991800-107993400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:107991800-107993400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:107991800-107993400	Active TSS	Fetal Muscle Trunk	muscle
37	chr11:107991800-107993600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:107991800-107994400	Active TSS	Right Atrium	heart
39	chr11:107991800-107995200	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr11:107992000-107992800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:107992000-107992800	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr11:107992000-107992800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr11:107992000-107992800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr11:107992000-107992800	Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr11:107992000-107992800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr11:107992000-107992800	Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr11:107992000-107992800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:107992000-107992800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:107992000-107992800	Active TSS	Duodenum Mucosa	Duodenum
50	chr11:107992000-107992800	Active TSS	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links