Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10160220	1.00[JPT][hapmap]
rs10501561	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs10792757	1.00[JPT][hapmap]
rs10898221	1.00[JPT][hapmap]
rs10898229	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10898230	1.00[JPT][hapmap]
rs10898231	1.00[JPT][hapmap]
rs10898233	1.00[JPT][hapmap]
rs11233966	1.00[JPT][hapmap]
rs11233969	1.00[JPT][hapmap]
rs11234001	1.00[JPT][hapmap]
rs11234010	0.82[EUR][1000 genomes]
rs12274848	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12277167	1.00[JPT][hapmap]
rs12283368	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12286690	1.00[JPT][hapmap]
rs12360734	1.00[JPT][hapmap]
rs1559855	1.00[JPT][hapmap]
rs17147295	1.00[JPT][hapmap]
rs7928075	1.00[JPT][hapmap]
rs9651749	0.91[CEU][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1038641	chr11:83996453-84334045	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541103	chr11:83996453-84334045	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1049696	chr11:84039547-84116297	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7111688	MMP20	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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