Variant report

Variant	rs7111805
Chromosome Location	chr11:63720305-63720306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63705424..63708366-chr11:63719461..63721078,2	MCF-7	breast:
2	chr11:63718404..63720015-chr11:63720198..63721762,2	K562	blood:

Variant related genes	Relation type
ENSG00000110583	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1499641	1.00[CHD][hapmap]
rs2957207	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs4472946	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7130187	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv897629	chr11:63664882-63866959	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
7	nsv897639	chr11:63691049-63844683	Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	esv1849906	chr11:63719273-63880383	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63707200-63724200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:63707400-63721400	Weak transcription	Small Intestine	intestine
3	chr11:63708200-63723400	Weak transcription	NH-A	brain
4	chr11:63713200-63725400	Weak transcription	Psoas Muscle	Psoas
5	chr11:63713200-63725800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:63713400-63721200	Weak transcription	Stomach Mucosa	stomach
7	chr11:63713400-63721600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:63713400-63721600	Weak transcription	Ovary	ovary
9	chr11:63713400-63724200	Strong transcription	K562	blood
10	chr11:63713400-63725200	Strong transcription	Fetal Intestine Small	intestine
11	chr11:63713400-63725400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:63713400-63725800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:63713400-63726200	Strong transcription	Fetal Stomach	stomach
14	chr11:63713400-63726800	Weak transcription	Fetal Brain Male	brain
15	chr11:63713400-63733800	Weak transcription	Right Atrium	heart
16	chr11:63713600-63723000	Weak transcription	Fetal Heart	heart
17	chr11:63713600-63724200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:63713600-63724200	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:63713600-63724400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:63713600-63725200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:63713600-63726000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:63713800-63724400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:63713800-63726000	Strong transcription	Fetal Muscle Leg	muscle
24	chr11:63714000-63726200	Strong transcription	Fetal Muscle Trunk	muscle
25	chr11:63714600-63720800	Weak transcription	Primary B cells from cord blood	blood
26	chr11:63714600-63720800	Weak transcription	Fetal Kidney	kidney
27	chr11:63714600-63721600	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:63715200-63720800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:63716400-63724000	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:63717600-63726200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:63717600-63726200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:63717800-63724000	Strong transcription	HSMMtube	muscle
33	chr11:63717800-63726000	Strong transcription	Brain Germinal Matrix	brain
34	chr11:63717800-63726000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:63718200-63721000	Genic enhancers	Fetal Thymus	thymus
36	chr11:63718200-63721200	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr11:63718200-63721600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:63718200-63724000	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr11:63718200-63725800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:63718400-63720400	Genic enhancers	Dnd41	blood
41	chr11:63718400-63720600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:63718800-63726000	Strong transcription	Fetal Brain Female	brain
43	chr11:63719000-63720600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr11:63719000-63720600	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr11:63719000-63721000	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr11:63719000-63724000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:63719000-63724000	Strong transcription	Hela-S3	cervix
48	chr11:63719000-63724200	Strong transcription	Fetal Lung	lung
49	chr11:63719200-63720400	Genic enhancers	Thymus	Thymus
50	chr11:63719200-63721200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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