Variant report

Variant	rs7112072
Chromosome Location	chr11:74205874-74205875
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74175411..74179003-chr11:74201966..74206100,6	MCF-7	breast:
2	chr11:74176347..74178704-chr11:74203526..74206053,3	K562	blood:
3	chr11:74202987..74205917-chr11:75525143..75527102,2	MCF-7	breast:
4	chr11:74204313..74206449-chr16:3506549..3509156,2	MCF-7	breast:
5	chr11:74185351..74193647-chr11:74202565..74206845,12	MCF-7	breast:
6	chr11:74203316..74206013-chr11:74301160..74305311,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255507	Chromatin interaction
ENSG00000198382	Chromatin interaction
ENSG00000262621	Chromatin interaction
ENSG00000122390	Chromatin interaction
ENSG00000077514	Chromatin interaction
ENSG00000175538	Chromatin interaction
ENSG00000255444	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11600217	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11600228	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11602554	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602790	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12365702	0.87[ASN][1000 genomes]
rs12786591	0.92[EUR][1000 genomes]
rs12790891	0.84[EUR][1000 genomes]
rs12792003	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12802860	0.92[EUR][1000 genomes]
rs12807400	0.92[EUR][1000 genomes]
rs34214542	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34289192	0.92[EUR][1000 genomes]
rs34348711	0.91[EUR][1000 genomes]
rs34549932	0.92[EUR][1000 genomes]
rs34555357	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35001165	0.92[EUR][1000 genomes]
rs35085968	0.92[EUR][1000 genomes]
rs35283305	0.89[EUR][1000 genomes]
rs35701857	0.92[EUR][1000 genomes]
rs35905518	0.86[EUR][1000 genomes]
rs4944900	0.89[EUR][1000 genomes]
rs4944901	0.89[EUR][1000 genomes]
rs55885482	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56291869	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66936010	0.83[EUR][1000 genomes]
rs67613598	0.89[EUR][1000 genomes]
rs684877	0.80[ASN][1000 genomes]
rs72981053	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv832209	chr11:74155883-74329119	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv897913	chr11:74171997-74216705	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv555444	chr11:74200739-74221170	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74205000-74213400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:74205200-74207800	Weak transcription	Ovary	ovary
3	chr11:74205400-74206200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:74205400-74206600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr11:74205400-74207800	Weak transcription	Esophagus	oesophagus
6	chr11:74205400-74208200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:74205400-74208400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:74205400-74209000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:74205400-74211200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:74205400-74215800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:74205600-74206600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:74205600-74207600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:74205600-74207800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:74205600-74207800	Weak transcription	Fetal Intestine Small	intestine
15	chr11:74205600-74207800	Weak transcription	Fetal Stomach	stomach
16	chr11:74205600-74208000	Weak transcription	Primary T cells from cord blood	blood
17	chr11:74205600-74209000	Weak transcription	Liver	Liver
18	chr11:74205600-74209200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:74205600-74209200	Weak transcription	Left Ventricle	heart
20	chr11:74205600-74209400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:74205600-74209400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:74205600-74210200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:74205600-74214800	Weak transcription	Pancreas	Pancrea
24	chr11:74205600-74215800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:74205800-74206000	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr11:74205800-74206200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr11:74205800-74206400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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