Variant report

Variant	rs7112260
Chromosome Location	chr11:77572621-77572622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7930079	1.00[AMR][1000 genomes]
rs7930581	1.00[AMR][1000 genomes]
rs7939005	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv520740	chr11:77553638-77997936	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77548800-77582800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:77566000-77592600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:77566200-77577000	Weak transcription	Osteobl	bone
4	chr11:77566200-77579800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:77566200-77580000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:77566200-77580400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:77566200-77580600	Weak transcription	HSMM	muscle
8	chr11:77566200-77582000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:77566200-77582600	Weak transcription	Colonic Mucosa	Colon
10	chr11:77566200-77583200	Weak transcription	Pancreas	Pancrea
11	chr11:77566200-77589000	Weak transcription	NHLF	lung
12	chr11:77566200-77589600	Weak transcription	Esophagus	oesophagus
13	chr11:77566200-77594600	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:77566400-77576200	Weak transcription	NHDF-Ad	bronchial
15	chr11:77566400-77576600	Weak transcription	NH-A	brain
16	chr11:77566400-77582000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr11:77566400-77582800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:77566400-77583000	Weak transcription	Spleen	Spleen
19	chr11:77566600-77580200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:77566800-77574800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:77566800-77580200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:77566800-77587800	Weak transcription	A549	lung
23	chr11:77567000-77580600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:77567000-77581800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:77567000-77582600	Weak transcription	HUVEC	blood vessel
26	chr11:77567000-77586600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:77567400-77573000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:77567400-77582600	Weak transcription	Placenta	Placenta
29	chr11:77567600-77577000	Weak transcription	HSMMtube	muscle
30	chr11:77567600-77582600	Weak transcription	Primary T cells from cord blood	blood
31	chr11:77567600-77589600	Weak transcription	HepG2	liver
32	chr11:77567800-77574000	Weak transcription	Gastric	stomach
33	chr11:77567800-77579600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:77567800-77580600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:77567800-77582400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:77567800-77582600	Weak transcription	Primary B cells from cord blood	blood
37	chr11:77567800-77582800	Weak transcription	Brain Substantia Nigra	brain
38	chr11:77567800-77582800	Weak transcription	Fetal Brain Female	brain
39	chr11:77567800-77589400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:77567800-77594800	Weak transcription	Brain Angular Gyrus	brain
41	chr11:77568000-77579800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr11:77568000-77579800	Weak transcription	Thymus	Thymus
43	chr11:77568000-77580400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:77568000-77580400	Weak transcription	Aorta	Aorta
45	chr11:77568000-77580600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:77568000-77580600	Weak transcription	GM12878-XiMat	blood
47	chr11:77568000-77580800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:77568000-77582400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr11:77568000-77582800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:77568000-77583000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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