Variant report

Variant	rs711236
Chromosome Location	chr2:30649165-30649166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:30643798..30646343-chr2:30647095..30650083,5	K562	blood:
2	chr2:30643130..30645110-chr2:30649070..30651101,2	MCF-7	breast:
3	chr2:30643531..30645684-chr2:30646943..30651051,5	K562	blood:
4	chr2:30647371..30649841-chr2:30651246..30653133,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1036941	0.88[AFR][1000 genomes]
rs11692096	1.00[ASW][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.86[YRI][hapmap]
rs11895131	1.00[ASW][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap]
rs11901266	0.82[YRI][hapmap]
rs1252619	0.88[AFR][1000 genomes]
rs1252627	0.83[GIH][hapmap];0.86[YRI][hapmap]
rs1252635	0.82[CHB][hapmap];0.83[GIH][hapmap];0.86[YRI][hapmap]
rs1662943	0.88[AFR][1000 genomes]
rs1662945	0.88[AFR][1000 genomes]
rs1723172	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17395007	0.82[CHB][hapmap];0.86[YRI][hapmap]
rs17395091	0.82[CHB][hapmap];0.88[GIH][hapmap];0.86[YRI][hapmap]
rs1869422	0.82[CHB][hapmap];0.85[YRI][hapmap]
rs2253299	0.82[CHB][hapmap]
rs2593445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs2593473	0.82[CHB][hapmap];0.86[YRI][hapmap]
rs2602803	0.82[CHB][hapmap];0.83[GIH][hapmap];1.00[YRI][hapmap]
rs2609920	1.00[ASW][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs57484347	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57637161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs711241	1.00[ASW][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs829566	0.82[CHB][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs829567	0.88[AFR][1000 genomes]
rs829568	1.00[ASW][hapmap];0.87[CEU][hapmap];0.82[CHB][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.92[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs829621	0.82[CHB][hapmap];0.86[YRI][hapmap]
rs829624	0.82[CHB][hapmap];0.87[GIH][hapmap];0.86[YRI][hapmap]
rs829625	1.00[ASW][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.86[YRI][hapmap]
rs829640	1.00[ASW][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs829643	1.00[ASW][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs829652	1.00[ASW][hapmap];0.82[CHB][hapmap];0.84[AFR][1000 genomes]
rs829656	0.89[YRI][hapmap]
rs829674	0.82[CHB][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs829676	1.00[ASW][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs829678	0.84[AFR][1000 genomes]
rs829683	0.82[CHB][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs829685	1.00[ASW][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs829688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs829691	1.00[AFR][1000 genomes]
rs829692	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs829697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv833648	chr2:30505882-30696275	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv1799950	chr2:30632520-30654319	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30644400-30650400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr2:30645000-30652400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr2:30645600-30650800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:30645600-30650800	Weak transcription	Fetal Intestine Large	intestine
5	chr2:30645600-30651000	Weak transcription	Gastric	stomach
6	chr2:30645600-30656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:30645800-30650800	Weak transcription	Stomach Mucosa	stomach
8	chr2:30645800-30651000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:30645800-30651000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr2:30645800-30656600	Weak transcription	Fetal Lung	lung
11	chr2:30646000-30653400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr2:30646400-30649200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:30646400-30651000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr2:30646400-30651200	Weak transcription	K562	blood
15	chr2:30646400-30651600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:30646400-30652400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr2:30646400-30656400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr2:30646400-30662600	Weak transcription	Thymus	Thymus
19	chr2:30646600-30649200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr2:30647600-30650800	Weak transcription	Fetal Thymus	thymus
21	chr2:30647600-30651400	Weak transcription	Dnd41	blood
22	chr2:30647800-30649200	Weak transcription	Primary T cells from cord blood	blood
23	chr2:30647800-30659800	Weak transcription	Left Ventricle	heart
24	chr2:30648000-30649400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr2:30648000-30650800	Weak transcription	Fetal Heart	heart
26	chr2:30648600-30650800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:30648600-30655400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:30648600-30655400	Weak transcription	NHDF-Ad	bronchial
29	chr2:30648600-30655400	Weak transcription	Osteobl	bone
30	chr2:30648600-30659600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr2:30649000-30649400	Enhancers	Primary B cells from peripheral blood	blood
32	chr2:30649000-30650000	Enhancers	Primary T cells fromperipheralblood	blood
33	chr2:30649000-30651600	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr2:30649000-30652200	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links