Variant report

Variant	rs7112662
Chromosome Location	chr11:121391078-121391079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11501161	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12285364	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12285564	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12290890	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12421319	0.81[AFR][1000 genomes]
rs17125414	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2298525	0.85[ASN][1000 genomes]
rs2298813	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4936635	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59675216	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60228070	0.82[ASN][1000 genomes]
rs755678	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121349800-121393000	Weak transcription	Colonic Mucosa	Colon
2	chr11:121350000-121401400	Weak transcription	Fetal Brain Male	brain
3	chr11:121350400-121393200	Weak transcription	Gastric	stomach
4	chr11:121365800-121392600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:121368400-121395800	Weak transcription	Fetal Kidney	kidney
6	chr11:121369000-121396800	Weak transcription	Ovary	ovary
7	chr11:121377400-121394400	Weak transcription	Pancreas	Pancrea
8	chr11:121377400-121396400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:121378000-121395800	Strong transcription	Primary T cells from cord blood	blood
10	chr11:121378400-121397800	Strong transcription	HepG2	liver
11	chr11:121379200-121391200	Strong transcription	Primary B cells from cord blood	blood
12	chr11:121379200-121392200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:121379200-121395800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr11:121379400-121395800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:121379400-121398000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:121380000-121395600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:121381000-121392000	Weak transcription	Stomach Mucosa	stomach
18	chr11:121381000-121397000	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr11:121381600-121391600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:121381600-121394400	Weak transcription	Lung	lung
21	chr11:121382800-121396600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:121383000-121398800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:121384000-121394400	Weak transcription	Aorta	Aorta
24	chr11:121384000-121396200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:121384200-121393200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:121385000-121391200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:121385200-121393000	Weak transcription	Brain Anterior Caudate	brain
28	chr11:121385400-121392600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:121385400-121394600	Weak transcription	Brain Angular Gyrus	brain
30	chr11:121385400-121394600	Weak transcription	Fetal Lung	lung
31	chr11:121385600-121392400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:121385600-121394000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:121385600-121396000	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr11:121385600-121396800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr11:121385600-121418200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:121385800-121394400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:121386000-121393000	Weak transcription	Brain Germinal Matrix	brain
38	chr11:121386000-121393200	Weak transcription	Esophagus	oesophagus
39	chr11:121386000-121393200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr11:121386200-121396200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:121386200-121396600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
42	chr11:121386400-121394400	Strong transcription	Fetal Thymus	thymus
43	chr11:121386400-121396200	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr11:121387000-121391400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:121387400-121391200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:121387400-121393000	Weak transcription	Fetal Brain Female	brain
47	chr11:121388600-121391800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:121388800-121391200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:121388800-121391600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr11:121388800-121392000	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links