Variant report

Variant	rs7112820
Chromosome Location	chr11:45599600-45599601
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr11:45599380-45599758	H1-hESC	embryonic stem cell:	n/a	chr11:45599518-45599528 chr11:45599518-45599528 chr11:45599518-45599528
2	EP300	chr11:45599363-45599608	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000254514	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4756003	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45598000-45600000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:45598200-45599800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:45598200-45600000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:45598400-45599800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr11:45598400-45600200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:45598400-45600200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:45598600-45600000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:45598600-45600000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:45598600-45600200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:45598800-45599800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:45598800-45599800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:45598800-45600200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:45599000-45600200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr11:45599200-45600000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr11:45599200-45600200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:45599200-45606400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:45599400-45599600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr11:45599400-45599600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr11:45599400-45600000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:45599400-45600000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr11:45599400-45600200	Enhancers	Brain Germinal Matrix	brain
22	chr11:45599600-45599800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

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