Variant report

Variant	rs7112853
Chromosome Location	chr11:121451209-121451210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1503423	0.88[ASN][1000 genomes]
rs1699103	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1699106	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1699108	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784923	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1784931	0.87[AFR][1000 genomes]
rs1790213	0.87[AMR][1000 genomes]
rs1792122	0.87[ASN][1000 genomes]
rs1792125	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs639648	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs640479	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116734	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7116751	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs924746	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv527072	chr11:121448090-121486552	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121407200-121459000	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:121414000-121452400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:121416400-121451800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:121416600-121471800	Strong transcription	Primary T cells from cord blood	blood
5	chr11:121417000-121452400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:121417600-121452400	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:121418000-121451800	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr11:121425000-121456800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:121428200-121451400	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr11:121431000-121466400	Weak transcription	Ovary	ovary
11	chr11:121434600-121453200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:121434800-121451800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:121435200-121464800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:121437800-121453600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:121438400-121453600	Weak transcription	Colonic Mucosa	Colon
16	chr11:121440600-121485000	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:121440800-121452000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:121441400-121451400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:121442200-121456800	Weak transcription	Esophagus	oesophagus
20	chr11:121443000-121455000	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:121443200-121452000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:121443400-121464600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:121443800-121456800	Weak transcription	Lung	lung
24	chr11:121443800-121458600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:121443800-121461600	Weak transcription	Pancreas	Pancrea
26	chr11:121444400-121452200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:121445000-121452000	Strong transcription	Fetal Intestine Small	intestine
28	chr11:121445000-121454600	Strong transcription	Fetal Intestine Large	intestine
29	chr11:121446800-121453200	Weak transcription	Right Atrium	heart
30	chr11:121447600-121451400	ZNF genes & repeats	GM12878-XiMat	blood
31	chr11:121448200-121452400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr11:121448200-121453600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:121448200-121453600	Weak transcription	Spleen	Spleen
34	chr11:121448400-121461200	Weak transcription	Gastric	stomach
35	chr11:121448800-121495600	Weak transcription	Stomach Mucosa	stomach
36	chr11:121449600-121451400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
37	chr11:121449600-121451600	Weak transcription	Brain Substantia Nigra	brain
38	chr11:121449600-121452200	Weak transcription	Brain Anterior Caudate	brain
39	chr11:121449600-121457200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr11:121449800-121451800	Strong transcription	Fetal Thymus	thymus
41	chr11:121449800-121452000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:121449800-121452000	Strong transcription	Brain Hippocampus Middle	brain
43	chr11:121449800-121465800	Weak transcription	Adipose Nuclei	Adipose
44	chr11:121450000-121451600	ZNF genes & repeats	Primary B cells from cord blood	blood
45	chr11:121450000-121452400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr11:121450000-121452400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr11:121450000-121452400	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr11:121450000-121453000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:121450000-121460200	Weak transcription	Brain Germinal Matrix	brain
50	chr11:121450200-121451800	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links