Variant report

Variant	rs7113936
Chromosome Location	chr11:58991263-58991264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58985014..58986524-chr11:58989804..58992131,2	K562	blood:
2	chr11:58990211..58992297-chr11:58995837..58998568,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11600401	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11606140	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11607673	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12419479	0.88[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1938593	0.81[YRI][hapmap]
rs2000478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2211912	0.96[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs34697089	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3944255	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4369428	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4939269	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs5029315	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs610123	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs61903328	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs656163	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs6591509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7113633	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7131079	0.92[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7928981	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942710	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7944135	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7944319	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7952377	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv2758272	chr11:58700092-59008673	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2759830	chr11:58700092-59008673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	esv1821250	chr11:58925860-59059179	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	esv3351601	chr11:58979308-59052763	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7113936	DTX4	cis	Esophagus Muscularis	GTEx

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58981000-58991600	Weak transcription	Spleen	Spleen
2	chr11:58985000-58991600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:58985000-58993200	Enhancers	Primary B cells from peripheral blood	blood
4	chr11:58987000-58991800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:58987200-58992600	Enhancers	NHLF	lung
6	chr11:58987400-58992600	Enhancers	NHDF-Ad	bronchial
7	chr11:58988400-58994000	Enhancers	Adipose Nuclei	Adipose
8	chr11:58988600-58991400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:58988800-58993000	Weak transcription	Lung	lung
10	chr11:58989000-58991600	Weak transcription	Left Ventricle	heart
11	chr11:58989600-58991400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:58989600-58991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:58989600-58992000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr11:58989600-58992000	Weak transcription	A549	lung
15	chr11:58989600-58992400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr11:58989800-58992200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:58990000-58991600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:58990000-58991600	Weak transcription	HMEC	breast
19	chr11:58990200-58991800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:58990400-58992200	Enhancers	Primary hematopoietic stem cells	blood
21	chr11:58990400-58993400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr11:58990600-58991400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:58990600-58991800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:58990600-58991800	Enhancers	Colon Smooth Muscle	Colon
25	chr11:58990600-58992600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:58990600-58992600	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr11:58990600-58992600	Enhancers	Fetal Stomach	stomach
28	chr11:58990600-58993000	Enhancers	Placenta	Placenta
29	chr11:58990800-58992400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:58990800-58993200	Enhancers	Right Atrium	heart
31	chr11:58990800-58993400	Enhancers	Stomach Mucosa	stomach
32	chr11:58991000-58991400	Enhancers	Primary B cells from cord blood	blood
33	chr11:58991200-58991400	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr11:58991200-58991400	Flanking Active TSS	GM12878-XiMat	blood
35	chr11:58991200-58991600	Enhancers	Rectal Smooth Muscle	rectum
36	chr11:58991200-58992200	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr11:58991200-58992400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr11:58991200-58992600	Enhancers	Fetal Lung	lung
39	chr11:58991200-58993000	Enhancers	Fetal Muscle Leg	muscle
40	chr11:58991200-58994200	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links