Variant report
| Variant | rs71143553 |
|---|---|
| Chromosome Location | chr16:65162077-65162078 |
| allele | -/CTCT/TCTC |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
| No data |
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| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CDH11 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833260 | chr16:65050647-65218759 | Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | esv34131 | chr16:65137094-65379496 | Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | esv3328210 | chr16:65160551-65164549 | Active TSS Enhancers | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv3372719 | chr16:65160876-65163424 | Enhancers | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3381931 | chr16:65161126-65164624 | Enhancers | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv3420493 | chr16:65161651-65164149 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
