Variant report

Variant	rs71147393
Chromosome Location	chr3:160638455-160638456
allele	-/AT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	esv1761633	chr3:160638452-160638456	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160630200-160641400	Weak transcription	Psoas Muscle	Psoas
2	chr3:160635400-160644000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:160635400-160649200	Weak transcription	Fetal Brain Female	brain
4	chr3:160636000-160644000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:160637400-160638800	Enhancers	Colon Smooth Muscle	Colon
6	chr3:160638200-160639000	Enhancers	Fetal Brain Male	brain
7	chr3:160638200-160641800	Weak transcription	Left Ventricle	heart
8	chr3:160638200-160647200	Weak transcription	Right Ventricle	heart
9	chr3:160638400-160643800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:160638400-160643800	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links