Variant report

Variant	rs711524
Chromosome Location	chr7:109384442-109384443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1069383	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1357749	0.81[AFR][1000 genomes]
rs1357750	0.81[AFR][1000 genomes]
rs1404236	0.81[AFR][1000 genomes]
rs2396159	0.81[AFR][1000 genomes]
rs3107918	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3107924	0.83[AMR][1000 genomes]
rs3114816	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs711526	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs711528	0.92[AFR][1000 genomes]
rs821180	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1015383	chr7:109315812-109585662	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532177	chr7:109319033-110123840	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv888951	chr7:109345821-109465038	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv429795	chr7:109349049-109572049	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109384200-109385200	Flanking Active TSS	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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