Variant report

Variant	rs7116139
Chromosome Location	chr11:108810525-108810526
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108794799..108797753-chr11:108810221..108812207,2	K562	blood:
2	chr11:108808750..108811658-chr11:108812114..108813943,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2726897	0.84[AFR][1000 genomes]
rs2726898	0.84[AFR][1000 genomes]
rs2726900	0.84[AFR][1000 genomes]
rs4754365	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
2	chr11:108768000-108810600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:108778200-108810600	Weak transcription	Ovary	ovary
4	chr11:108780600-108810600	Weak transcription	Pancreas	Pancrea
5	chr11:108783000-108810600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr11:108786400-108810600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:108787000-108810800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:108787200-108815000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr11:108787400-108810600	Weak transcription	Liver	Liver
10	chr11:108790200-108810600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr11:108791200-108810600	Weak transcription	Dnd41	blood
12	chr11:108791400-108810800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr11:108791600-108810800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr11:108794600-108810600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:108794600-108810600	Weak transcription	Aorta	Aorta
16	chr11:108794600-108811800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:108794800-108810600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:108797200-108811200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:108797400-108816200	Weak transcription	Fetal Intestine Small	intestine
20	chr11:108798200-108813000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:108798200-108814800	Weak transcription	Brain Anterior Caudate	brain
22	chr11:108798400-108811000	Weak transcription	Fetal Stomach	stomach
23	chr11:108798800-108811000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:108798800-108814600	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:108799200-108812000	Weak transcription	Thymus	Thymus
26	chr11:108800000-108810600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:108800200-108810600	Weak transcription	HSMM	muscle
28	chr11:108800200-108811200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:108800600-108810600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:108800600-108810800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:108800800-108818000	Weak transcription	HMEC	breast
32	chr11:108801000-108810600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:108802000-108810600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:108802200-108811000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:108802400-108810600	Weak transcription	NHEK	skin
36	chr11:108802600-108812800	Weak transcription	Hela-S3	cervix
37	chr11:108805000-108810600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:108805000-108810600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:108805000-108811200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr11:108805000-108812200	Weak transcription	NHLF	lung
41	chr11:108805200-108813400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr11:108805200-108814600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:108805200-108829600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr11:108805400-108810800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:108805800-108810600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr11:108805800-108811200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:108805800-108814800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr11:108806200-108810600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr11:108806200-108811000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr11:108807200-108811400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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