Variant report

Variant	rs7117182
Chromosome Location	chr11:46729065-46729066
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46727818..46730123-chrX:69570212..69571712,2	MCF-7	breast:
2	chr11:46698595..46700569-chr11:46727861..46730594,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3136478	0.80[YRI][hapmap]
rs4612753	1.00[MEX][hapmap]
rs7118544	1.00[EUR][1000 genomes]
rs7947796	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46723600-46729600	Strong transcription	NHEK	skin
2	chr11:46723600-46730200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:46723600-46730200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:46723600-46732000	Weak transcription	Fetal Heart	heart
5	chr11:46723600-46739800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:46723800-46729200	Strong transcription	Placenta	Placenta
7	chr11:46723800-46729800	Strong transcription	Fetal Lung	lung
8	chr11:46723800-46733000	Strong transcription	Fetal Stomach	stomach
9	chr11:46724000-46729200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:46724000-46729200	Strong transcription	Thymus	Thymus
11	chr11:46724000-46729200	Strong transcription	K562	blood
12	chr11:46724000-46729400	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:46724000-46729600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:46724000-46729600	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:46724000-46730000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:46724000-46730200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:46724000-46730200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr11:46724000-46731000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:46724200-46729200	Strong transcription	Placenta Amnion	Placenta Amnion
20	chr11:46724200-46729600	Strong transcription	NHLF	lung
21	chr11:46724200-46730000	Strong transcription	Adipose Nuclei	Adipose
22	chr11:46724400-46729200	Strong transcription	Fetal Intestine Large	intestine
23	chr11:46724400-46729400	Strong transcription	Esophagus	oesophagus
24	chr11:46724400-46729600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:46724400-46729600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:46724400-46729600	Strong transcription	Aorta	Aorta
27	chr11:46724400-46729600	Strong transcription	Brain Angular Gyrus	brain
28	chr11:46724400-46729600	Strong transcription	Rectal Smooth Muscle	rectum
29	chr11:46724400-46729600	Strong transcription	Right Ventricle	heart
30	chr11:46724400-46729800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:46724400-46730000	Strong transcription	Fetal Brain Female	brain
32	chr11:46724400-46730200	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr11:46724400-46730200	Strong transcription	Primary B cells from peripheral blood	blood
34	chr11:46724400-46730200	Strong transcription	Osteobl	bone
35	chr11:46724400-46732200	Weak transcription	Right Atrium	heart
36	chr11:46724400-46733200	Strong transcription	Fetal Intestine Small	intestine
37	chr11:46724600-46729200	Strong transcription	Primary B cells from cord blood	blood
38	chr11:46724600-46729400	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr11:46724600-46729600	Strong transcription	Fetal Muscle Leg	muscle
40	chr11:46724600-46730000	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:46724600-46730400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:46724800-46729400	Strong transcription	Liver	Liver
43	chr11:46724800-46729600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:46724800-46729600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:46724800-46729600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:46724800-46729600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:46724800-46729600	Strong transcription	Brain Hippocampus Middle	brain
48	chr11:46724800-46729600	Strong transcription	Duodenum Mucosa	Duodenum
49	chr11:46724800-46729600	Strong transcription	Pancreas	Pancrea
50	chr11:46724800-46729600	Strong transcription	Skeletal Muscle Male	skeletal muscle

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