Variant report

Variant	rs7118532
Chromosome Location	chr11:119540470-119540471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119536475..119542158-chr11:119597745..119601129,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110400	Chromatin interaction
ENSG00000254854	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10790330	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10790331	0.86[EUR][1000 genomes]
rs2292293	0.86[EUR][1000 genomes]
rs4459318	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4936492	0.82[EUR][1000 genomes]
rs4938704	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4938705	0.91[EUR][1000 genomes]
rs4938706	0.91[EUR][1000 genomes]
rs4938708	0.82[EUR][1000 genomes]
rs4938709	0.82[EUR][1000 genomes]
rs7933848	0.82[EUR][1000 genomes]
rs7950059	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898420	chr11:119488646-119541332	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv984471	chr11:119505802-119568473	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119523200-119541800	Weak transcription	Left Ventricle	heart
2	chr11:119530200-119546000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:119530400-119541600	Weak transcription	Small Intestine	intestine
4	chr11:119531000-119542000	Weak transcription	Colonic Mucosa	Colon
5	chr11:119531200-119541800	Weak transcription	Fetal Heart	heart
6	chr11:119532400-119541200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:119532400-119544400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr11:119532800-119541800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:119533000-119542000	Weak transcription	Right Atrium	heart
10	chr11:119533000-119543400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:119534800-119541400	Weak transcription	Fetal Lung	lung
12	chr11:119534800-119542600	Weak transcription	Fetal Kidney	kidney
13	chr11:119535000-119542000	Weak transcription	Fetal Thymus	thymus
14	chr11:119535000-119542400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:119535200-119541000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:119535200-119541000	Weak transcription	Brain Germinal Matrix	brain
17	chr11:119535200-119541600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:119535200-119542200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:119535200-119542400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:119535200-119542600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:119535200-119544200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:119535200-119552600	Weak transcription	HepG2	liver
23	chr11:119536000-119544000	Weak transcription	Fetal Intestine Large	intestine
24	chr11:119536200-119541800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:119536400-119542600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:119536400-119544000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:119537000-119541800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:119537000-119541800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr11:119537000-119541800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:119537000-119542400	Weak transcription	Spleen	Spleen
31	chr11:119537000-119542800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:119537200-119541600	Weak transcription	HSMMtube	muscle
33	chr11:119537400-119541800	Weak transcription	Osteobl	bone
34	chr11:119537600-119541600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:119537600-119541600	Weak transcription	HSMM	muscle
36	chr11:119537600-119541800	Weak transcription	Adipose Nuclei	Adipose
37	chr11:119537600-119541800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:119537600-119542000	Weak transcription	Liver	Liver
39	chr11:119537600-119542200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:119537600-119542200	Weak transcription	Stomach Mucosa	stomach
41	chr11:119537600-119542400	Weak transcription	Pancreas	Pancrea
42	chr11:119537600-119542600	Weak transcription	Gastric	stomach
43	chr11:119537600-119544200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr11:119537800-119541600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:119537800-119541600	Weak transcription	Brain Anterior Caudate	brain
46	chr11:119537800-119541600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr11:119537800-119541800	Weak transcription	Ovary	ovary
48	chr11:119537800-119542000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:119537800-119542000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:119537800-119542000	Weak transcription	HMEC	breast

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