Variant report

Variant	rs7119061
Chromosome Location	chr11:121126530-121126531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr11:121126228-121126695	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr11:121126286-121126673	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:121126488-121126538	ECC-1	luminal epithelium:	n/a
2	chr11:121126488-121126538	GM12878	blood:	n/a
3	chr11:121126488-121126538	AG04449	skin:	fetal
4	chr11:121126488-121126538	SK-N-SH	brain:	n/a
5	chr11:121126488-121126538	Hepatocyte	liver:	n/a
6	chr11:121126488-121126538	HepG2	liver:	n/a
7	chr11:121126488-121126538	A549	lung:	n/a
8	chr11:121126488-121126538	SK-N-SH_RA	brain:	n/a
9	chr11:121126488-121126538	HRPEpiC	eye:	n/a
10	chr11:121126488-121126538	NB4	blood:	n/a
11	chr11:121126488-121126538	IMR90	lung:	fetal
12	chr11:121126488-121126538	HEK293	kidney:	embryo
13	chr11:121126488-121126538	HRCEpiC	kidney:	n/a
14	chr11:121126488-121126538	HRE	kidney:	n/a
15	chr11:121126488-121126538	HL-60	blood:	n/a
16	chr11:121126488-121126538	PFSK-1	brain:	n/a
17	chr11:121126488-121126538	HIPEpiC	eye:	n/a
18	chr11:121126488-121126538	SK-N-MC	brain:	n/a
19	chr11:121126488-121126538	HUVEC	blood vessel:	n/a
20	chr11:121126488-121126538	HNPCEpiC	eye:	n/a
21	chr11:121126488-121126538	AG09319	gingival:	n/a
22	chr11:121126488-121126538	HAEpiC	amniotic membrane:	n/a
23	chr11:121126488-121126538	PrEC	prostate:	n/a
24	chr11:121126488-121126538	NHDF-neo	bronchial:	n/a
25	chr11:121126488-121126538	AG09309	skin:	n/a
26	chr11:121126488-121126538	ProgFib	skin:	n/a
27	chr11:121126488-121126538	HCM	heart:	n/a
28	chr11:121126488-121126538	K562	blood:	n/a
29	chr11:121126488-121126538	Caco-2	colon:	n/a
30	chr11:121126488-121126538	GM12892	blood:	n/a
31	chr11:121126488-121126538	RPTEC	kidney:	n/a
32	chr11:121126488-121126538	GM06990	blood:	n/a
33	chr11:121126488-121126538	T-47D	breast:	n/a
34	chr11:121126488-121126538	H1-hESC	embryonic stem cell:	embryo
35	chr11:121126488-121126538	MCF-7	breast:	n/a
36	chr11:121126488-121126538	HCT-116	colon:	n/a
37	chr11:121126488-121126538	HMEC	breast:	n/a
38	chr11:121126488-121126538	MCF10A-Er-Src	breast:	n/a
39	chr11:121126488-121126538	AG04450	lung:	fetal
40	chr11:121126488-121126538	BJ	skin:	n/a
41	chr11:121126488-121126538	AoSMC	blood vessel:	n/a
42	chr11:121126488-121126538	NH-A	brain:	n/a
43	chr11:121126488-121126538	PANC-1	pancreas:	n/a
44	chr11:121126488-121126538	LNCaP	prostate:	n/a
45	chr11:121126488-121126538	SAEC	small airway:	n/a
46	chr11:121126488-121126538	AG10803	skin:	n/a
47	chr11:121126488-121126538	NT2-D1	testis:	n/a
48	chr11:121126488-121126538	SKMC	muscle:	n/a
49	chr11:121126488-121126538	Jurkat	blood:	n/a
50	chr11:121126488-121126538	Hela-S3	cervix:	n/a

No data

Variant related genes	Relation type
RPS4XP12	TF binding region
RPS4XP12	CpG island

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10219304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1061332	0.90[CHB][hapmap]
rs10750182	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10750183	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10790419	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10790424	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10790428	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10790432	0.84[EUR][1000 genomes]
rs10892715	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12419633	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1583124	0.91[CEU][hapmap];0.95[CHB][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2163281	0.91[CEU][hapmap];0.95[CHB][hapmap];0.84[EUR][1000 genomes]
rs59005463	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6589870	0.91[CEU][hapmap];0.95[CHB][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7115581	0.91[CEU][hapmap];0.95[CHB][hapmap];0.84[EUR][1000 genomes]
rs7115602	0.91[CEU][hapmap];0.95[CHB][hapmap];0.84[EUR][1000 genomes]
rs7128047	0.87[CEU][hapmap];0.95[CHB][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7128342	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73005128	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs751417	0.85[CHB][hapmap]
rs7937589	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv898424	chr11:121108865-121206354	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv898425	chr11:121115206-121215237	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121124800-121128200	Weak transcription	NHEK	skin
2	chr11:121125000-121128200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:121125000-121128200	Weak transcription	HMEC	breast
4	chr11:121125000-121136000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:121125600-121128400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:121126000-121126800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:121126000-121127200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:121126200-121126800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:121126200-121127200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:121126400-121126600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:121126400-121126600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:121126400-121126600	Enhancers	H9 Cell Line	embryonic stem cell
13	chr11:121126400-121126600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:121126400-121126800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:121126400-121127200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links