Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10767148	0.98[ASN][1000 genomes]
rs10767149	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10767150	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10834252	0.98[ASN][1000 genomes]
rs10834253	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10834254	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10834258	0.81[ASN][1000 genomes]
rs11027645	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11027646	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11027647	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1915054	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1915065	0.82[ASN][1000 genomes]
rs1915066	0.82[ASN][1000 genomes]
rs1949541	0.81[ASN][1000 genomes]
rs2946787	0.81[ASN][1000 genomes]
rs2946788	0.83[ASN][1000 genomes]
rs4145287	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4307719	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484002	0.97[ASN][1000 genomes]
rs7118930	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7129405	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72636024	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897070	chr11:23982573-24074207	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv897071	chr11:23982573-24157765	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv897072	chr11:23995576-24085740	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23994600-23999600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:23995800-23999000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:23995800-23999000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:23997400-23999400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr11:23997400-23999600	Enhancers	Osteobl	bone
6	chr11:23998000-23999600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:23998000-23999600	Enhancers	NH-A	brain
8	chr11:23998200-23999000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:23998400-23999000	Weak transcription	NHLF	lung
10	chr11:23998400-23999200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:23998400-23999200	Enhancers	HSMM	muscle
12	chr11:23998400-23999600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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