Variant report

Variant	rs7119876
Chromosome Location	chr11:17537033-17537034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17536038..17537815-chr11:17542509..17544557,2	K562	blood:

Variant related genes	Relation type
ENSG00000006611	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11024317	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1119618	0.94[GIH][hapmap];0.80[TSI][hapmap]
rs12793661	0.94[GIH][hapmap]
rs17714673	0.86[GIH][hapmap]
rs2073584	0.81[CEU][hapmap];0.80[GIH][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs2237964	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3858490	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs7107406	0.86[GIH][hapmap]
rs7129919	0.86[GIH][hapmap];0.80[TSI][hapmap]
rs878208	0.81[CEU][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv33415	chr11:17532596-17549436	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17516800-17553000	Weak transcription	Stomach Mucosa	stomach
2	chr11:17526200-17539400	Weak transcription	Pancreas	Pancrea
3	chr11:17526600-17537200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:17527600-17549200	Strong transcription	Duodenum Mucosa	Duodenum
5	chr11:17528800-17544000	Weak transcription	Gastric	stomach
6	chr11:17529800-17548600	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr11:17530800-17539800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:17531600-17547200	Strong transcription	Fetal Intestine Large	intestine
9	chr11:17531800-17552400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:17532200-17547200	Strong transcription	Fetal Intestine Small	intestine
11	chr11:17533400-17539400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:17533600-17537400	Weak transcription	Spleen	Spleen
13	chr11:17533600-17537600	Weak transcription	Colonic Mucosa	Colon
14	chr11:17533600-17541800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:17533800-17539400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:17535000-17538400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr11:17535200-17537400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:17535400-17542400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr11:17535600-17540600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:17535800-17537200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:17536200-17542600	Enhancers	Brain Angular Gyrus	brain
22	chr11:17536400-17540200	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr11:17536600-17537200	Enhancers	Colon Smooth Muscle	Colon
24	chr11:17536600-17539600	Enhancers	Brain Hippocampus Middle	brain
25	chr11:17536800-17542400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr11:17537000-17538000	Flanking Active TSS	Brain Substantia Nigra	brain

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