Variant report

Variant	rs71201904
Chromosome Location	chr8:8862021-8862022
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:8743895..8745799-chr8:8861981..8863756,2	K562	blood:
2	chr8:8756284..8757870-chr8:8861137..8863458,2	K562	blood:
3	chr8:8860553..8862183-chr8:9011362..9013111,2	K562	blood:
4	chr8:8608069..8609942-chr8:8861282..8862933,2	MCF-7	breast:
5	chr8:8859472..8863506-chr8:8866779..8870820,4	MCF-7	breast:
6	chr8:8859158..8867027-chr8:8867199..8874373,17	K562	blood:

Variant related genes	Relation type
ENSG00000104626	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv831229	chr8:8751523-8926235	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv610205	chr8:8799111-8891644	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	n/a
5	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
8	esv3428911	chr8:8861935-8862241	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv1494814	chr8:8862020-8862021	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8860000-8863400	Active TSS	K562	blood
2	chr8:8860200-8862200	Active TSS	Hela-S3	cervix
3	chr8:8860800-8862200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr8:8861200-8862200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:8861200-8862400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:8861200-8892400	Weak transcription	Aorta	Aorta
7	chr8:8861400-8862200	Enhancers	Primary B cells from cord blood	blood
8	chr8:8861400-8862200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr8:8861400-8907000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr8:8861600-8862200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr8:8861600-8862200	Enhancers	Left Ventricle	heart
12	chr8:8861600-8862200	Enhancers	Lung	lung
13	chr8:8861600-8863600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:8861600-8863800	Weak transcription	Fetal Intestine Large	intestine
15	chr8:8861600-8866600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr8:8861600-8866600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr8:8861600-8868200	Weak transcription	Brain Substantia Nigra	brain
18	chr8:8861600-8870600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:8861600-8876200	Weak transcription	Esophagus	oesophagus
20	chr8:8861600-8878600	Weak transcription	Colon Smooth Muscle	Colon
21	chr8:8861600-8885600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:8861800-8862200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr8:8861800-8863400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr8:8861800-8863400	Weak transcription	NH-A	brain
25	chr8:8861800-8863600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr8:8861800-8863600	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr8:8861800-8863600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr8:8861800-8863600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr8:8861800-8864200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr8:8861800-8864200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr8:8861800-8864200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr8:8861800-8864200	Weak transcription	Stomach Mucosa	stomach
33	chr8:8861800-8864200	Weak transcription	HSMM	muscle
34	chr8:8861800-8865400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr8:8861800-8865400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:8861800-8865800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr8:8861800-8866000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr8:8861800-8866000	Weak transcription	Placenta	Placenta
39	chr8:8861800-8866200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr8:8861800-8866200	Weak transcription	Primary T cells from cord blood	blood
41	chr8:8861800-8866200	Weak transcription	Brain Germinal Matrix	brain
42	chr8:8861800-8866200	Weak transcription	Fetal Thymus	thymus
43	chr8:8861800-8866600	Weak transcription	Brain Hippocampus Middle	brain
44	chr8:8861800-8866600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr8:8861800-8867200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr8:8861800-8867200	Weak transcription	Fetal Muscle Leg	muscle
47	chr8:8861800-8869000	Weak transcription	Fetal Intestine Small	intestine
48	chr8:8861800-8870400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr8:8861800-8870400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr8:8861800-8870400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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