Variant report

Variant	rs7120278
Chromosome Location	chr11:45818111-45818112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11038652	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11038653	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11038658	0.94[ASN][1000 genomes]
rs12274152	0.93[ASN][1000 genomes]
rs12283175	0.93[ASN][1000 genomes]
rs12419733	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12421083	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2457961	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2467287	0.83[ASN][1000 genomes]
rs4755339	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7109178	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7114337	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7116816	0.94[ASN][1000 genomes]
rs7120031	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7130242	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7482133	0.97[ASN][1000 genomes]
rs7926593	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv897315	chr11:45817637-45838926	Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45815000-45820400	Weak transcription	Lung	lung
2	chr11:45816000-45823200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:45816000-45825400	Weak transcription	Gastric	stomach
4	chr11:45816400-45819200	Weak transcription	Liver	Liver
5	chr11:45816400-45823200	Weak transcription	Stomach Mucosa	stomach
6	chr11:45817400-45818800	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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