Variant report

Variant	rs7121082
Chromosome Location	chr11:5577696-5577697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:5269002..5271687-chr11:5576033..5577884,2	K562	blood:
2	chr11:5575874..5577809-chr11:5596077..5598806,2	K562	blood:
3	11:5250847-5268367..11:5571131-5578892	K562	blood:
4	chr11:5527022..5529491-chr11:5577103..5579456,2	K562	blood:
5	chr11:5577515..5579353-chr11:5616024..5618280,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213934	Chromatin interaction
ENSG00000223609	Chromatin interaction
ENSG00000121236	Chromatin interaction
ENSG00000260629	Chromatin interaction
ENSG00000258588	Chromatin interaction
ENSG00000229988	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10769061	0.98[ASN][1000 genomes]
rs13328868	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1368695	0.98[ASN][1000 genomes]
rs1368696	0.98[ASN][1000 genomes]
rs1368697	0.98[ASN][1000 genomes]
rs1498479	0.98[ASN][1000 genomes]
rs1541936	0.97[ASN][1000 genomes]
rs1541937	0.98[ASN][1000 genomes]
rs1541938	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1541939	0.98[ASN][1000 genomes]
rs1541940	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1541941	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1694674	0.98[ASN][1000 genomes]
rs1694676	0.98[ASN][1000 genomes]
rs1874828	0.98[ASN][1000 genomes]
rs2341423	0.98[ASN][1000 genomes]
rs2341424	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2341425	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2341426	0.95[ASN][1000 genomes]
rs2436705	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2436706	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2647602	0.98[ASN][1000 genomes]
rs368019	0.98[ASN][1000 genomes]
rs368824	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs369848	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs369879	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs371761	0.98[ASN][1000 genomes]
rs380372	0.90[ASN][1000 genomes]
rs382979	0.98[ASN][1000 genomes]
rs385925	0.98[ASN][1000 genomes]
rs396341	0.98[ASN][1000 genomes]
rs400036	0.95[ASN][1000 genomes]
rs401426	0.98[ASN][1000 genomes]
rs405680	0.98[ASN][1000 genomes]
rs407487	0.98[ASN][1000 genomes]
rs407807	0.98[ASN][1000 genomes]
rs408362	0.98[ASN][1000 genomes]
rs408409	0.98[ASN][1000 genomes]
rs408897	0.98[ASN][1000 genomes]
rs411933	0.98[ASN][1000 genomes]
rs417272	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs417854	0.97[ASN][1000 genomes]
rs418125	0.98[ASN][1000 genomes]
rs423501	0.98[ASN][1000 genomes]
rs424299	0.98[ASN][1000 genomes]
rs4243961	0.98[ASN][1000 genomes]
rs4243962	0.98[ASN][1000 genomes]
rs429957	0.98[ASN][1000 genomes]
rs430197	0.98[ASN][1000 genomes]
rs430769	0.98[ASN][1000 genomes]
rs431117	0.98[ASN][1000 genomes]
rs431409	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs432090	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs434320	0.98[ASN][1000 genomes]
rs434777	0.98[ASN][1000 genomes]
rs437746	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs445586	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs445728	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs446099	0.98[ASN][1000 genomes]
rs586967	0.98[ASN][1000 genomes]
rs6578658	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7107218	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7115987	0.98[ASN][1000 genomes]
rs7119060	0.95[ASN][1000 genomes]
rs7121765	0.98[ASN][1000 genomes]
rs7932841	0.97[ASN][1000 genomes]
rs7951442	0.98[ASN][1000 genomes]
rs9666981	0.97[ASN][1000 genomes]
rs9666982	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048608	chr11:5328516-5645179	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
2	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv896939	chr11:5497799-5809548	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
5	nsv896940	chr11:5535007-5582430	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5563600-5582400	Weak transcription	Aorta	Aorta
2	chr11:5572400-5577800	Weak transcription	K562	blood
3	chr11:5577600-5578600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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