Variant report

Variant	rs7121410
Chromosome Location	chr11:10421297-10421298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10160674	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10466511	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10743136	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1037131	chr11:10401998-10429998	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv553477	chr11:10403539-10429998	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10412800-10422200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr11:10414600-10427400	Weak transcription	Ovary	ovary
3	chr11:10415600-10436000	Weak transcription	Right Ventricle	heart
4	chr11:10416800-10423200	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:10417200-10423000	Weak transcription	Brain Anterior Caudate	brain
6	chr11:10417800-10427400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:10418000-10422800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:10420000-10422000	Weak transcription	HUVEC	blood vessel
9	chr11:10420000-10422200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:10420200-10422000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr11:10420400-10421800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:10420400-10422000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:10420400-10422000	Weak transcription	Left Ventricle	heart
14	chr11:10420400-10422000	Weak transcription	Lung	lung
15	chr11:10420400-10422000	Weak transcription	NHEK	skin
16	chr11:10420400-10422200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:10420400-10422200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:10420400-10422200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:10420400-10422800	Weak transcription	Right Atrium	heart
20	chr11:10420400-10422800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:10420400-10426000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:10420400-10426000	Weak transcription	NHDF-Ad	bronchial
23	chr11:10420400-10427400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:10420400-10429400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:10420600-10421800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:10420600-10422000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:10420600-10422000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:10420600-10427400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:10420800-10421800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:10420800-10422200	Weak transcription	Adipose Nuclei	Adipose
31	chr11:10421000-10421400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr11:10421000-10421400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:10421000-10422000	Weak transcription	Placenta	Placenta
34	chr11:10421200-10421600	Weak transcription	Primary monocytes fromperipheralblood	blood

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