Variant report

Variant	rs7121654
Chromosome Location	chr11:58898826-58898827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58896273..58898836-chr11:58901279..58902925,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MPEG1-2	chr11:58897610-58901122	XLOC_009445

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11229803	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11229833	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4409856	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4445654	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517845	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs567951	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs588952	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7110278	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950640	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv2758272	chr11:58700092-59008673	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2759830	chr11:58700092-59008673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	esv2757447	chr11:58746238-58906018	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv975329	chr11:58767290-58907813	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv430388	chr11:58769524-58925824	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	nsv468578	chr11:58790628-58901763	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv555147	chr11:58790628-58901763	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv975190	chr11:58893580-58903375	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58875200-58909600	Weak transcription	Stomach Mucosa	stomach
2	chr11:58875400-58909600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:58881600-58903600	Weak transcription	Hela-S3	cervix
4	chr11:58886800-58901200	Weak transcription	NHLF	lung
5	chr11:58886800-58903400	Weak transcription	NHEK	skin
6	chr11:58887000-58899000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:58887000-58899000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:58888400-58899400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:58891400-58899200	Weak transcription	Left Ventricle	heart
10	chr11:58892200-58899200	Weak transcription	Small Intestine	intestine
11	chr11:58893200-58899000	Weak transcription	Thymus	Thymus
12	chr11:58893600-58899000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:58893600-58899000	Weak transcription	Fetal Intestine Large	intestine
14	chr11:58893600-58902200	Weak transcription	HSMM	muscle
15	chr11:58893800-58901800	Weak transcription	NHDF-Ad	bronchial
16	chr11:58893800-58903400	Weak transcription	HUVEC	blood vessel
17	chr11:58893800-58909600	Weak transcription	Fetal Brain Male	brain
18	chr11:58894000-58899200	Weak transcription	Adipose Nuclei	Adipose
19	chr11:58894400-58899000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:58894800-58899000	Weak transcription	Lung	lung
21	chr11:58895800-58903400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:58896000-58899400	Weak transcription	Aorta	Aorta
23	chr11:58896200-58899000	Weak transcription	Colonic Mucosa	Colon
24	chr11:58896200-58903200	Strong transcription	Primary T cells from cord blood	blood
25	chr11:58897000-58899200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:58897200-58900400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:58897200-58901400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
28	chr11:58897200-58901800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:58897400-58899000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:58897400-58901400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:58897400-58903600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:58897600-58902800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:58897600-58903200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:58897800-58899200	Strong transcription	Ovary	ovary
35	chr11:58897800-58901200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
36	chr11:58897800-58901400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
37	chr11:58898000-58899800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
38	chr11:58898000-58899800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:58898000-58900000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
40	chr11:58898000-58901000	ZNF genes & repeats	Primary B cells from cord blood	blood
41	chr11:58898000-58902800	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:58898200-58899000	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr11:58898200-58900000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:58898200-58902000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:58898200-58902800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr11:58898400-58899200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:58898400-58899200	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:58898400-58899200	Strong transcription	Osteobl	bone
49	chr11:58898400-58900600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
50	chr11:58898400-58902800	Strong transcription	Liver	Liver

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