Variant report

Variant	rs7123261
Chromosome Location	chr11:101857914-101857915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4357659	1.00[EUR][1000 genomes]
rs7111429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101787400-101861200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:101787400-101866000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:101812200-101866600	Weak transcription	Fetal Brain Male	brain
4	chr11:101820600-101863800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:101821200-101878400	Weak transcription	Brain Anterior Caudate	brain
6	chr11:101827200-101883400	Weak transcription	Aorta	Aorta
7	chr11:101834600-101876000	Weak transcription	Fetal Lung	lung
8	chr11:101842600-101871000	Weak transcription	Brain Substantia Nigra	brain
9	chr11:101847600-101870800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:101851600-101878200	Weak transcription	HUVEC	blood vessel
11	chr11:101851800-101863600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:101851800-101870600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:101852200-101861000	Weak transcription	Fetal Brain Female	brain
14	chr11:101852200-101874800	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:101852600-101863800	Weak transcription	Brain Angular Gyrus	brain
16	chr11:101852800-101876000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:101853000-101860400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:101853800-101858200	Weak transcription	Fetal Intestine Large	intestine
19	chr11:101853800-101868200	Weak transcription	Left Ventricle	heart
20	chr11:101854200-101874800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:101854400-101878200	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:101854800-101863800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:101854800-101877600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:101855000-101858200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:101855000-101858800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr11:101855200-101863800	Weak transcription	Adipose Nuclei	Adipose
27	chr11:101855200-101874000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:101855400-101862000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:101856800-101863800	Weak transcription	Ovary	ovary
30	chr11:101857400-101858800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:101857800-101858400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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