Variant report

Variant	rs7123341
Chromosome Location	chr11:66603129-66603130
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66459547..66465432-chr11:66599355..66603296,9	MCF-7	breast:
2	chr11:66457750..66467271-chr11:66598332..66608447,16	K562	blood:
3	chr11:66452976..66456335-chr11:66601263..66603949,4	MCF-7	breast:
4	chr11:66487468..66490091-chr11:66601151..66603548,2	MCF-7	breast:
5	chr11:66595690..66597317-chr11:66600394..66603185,2	MCF-7	breast:
6	chr11:66461004..66463732-chr11:66600353..66604002,4	K562	blood:
7	chr11:66466386..66469283-chr11:66602977..66604850,2	MCF-7	breast:
8	chr11:66460828..66465487-chr11:66600237..66603918,6	MCF-7	breast:
9	chr11:66588656..66591522-chr11:66602180..66604582,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000173898	Chromatin interaction
ENSG00000173715	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11820976	1.00[AFR][1000 genomes]
rs7928312	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897789	chr11:66372390-66634397	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	nsv897790	chr11:66414915-66626234	Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv427891	chr11:66456140-66606701	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv468602	chr11:66468469-66634397	Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
5	nsv555225	chr11:66468469-66634397	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
6	nsv508638	chr11:66541653-66643634	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv897794	chr11:66579572-66744119	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
8	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66513400-66606800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:66530000-66605400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:66544000-66609600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:66554600-66605800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:66556800-66607400	Weak transcription	Fetal Lung	lung
6	chr11:66560400-66605400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:66561600-66609400	Weak transcription	Colonic Mucosa	Colon
8	chr11:66565000-66605400	Weak transcription	Gastric	stomach
9	chr11:66567000-66606800	Weak transcription	Brain Anterior Caudate	brain
10	chr11:66567000-66609800	Weak transcription	Ovary	ovary
11	chr11:66568000-66609400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:66568800-66609600	Weak transcription	Fetal Kidney	kidney
13	chr11:66570000-66605400	Weak transcription	HSMMtube	muscle
14	chr11:66570000-66606800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:66571000-66609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:66571600-66609600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:66571800-66605400	Weak transcription	Lung	lung
18	chr11:66572000-66606600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:66572000-66609200	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:66576000-66605400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:66576000-66609600	Weak transcription	Esophagus	oesophagus
22	chr11:66576000-66609800	Weak transcription	Aorta	Aorta
23	chr11:66576200-66605200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr11:66577000-66609400	Weak transcription	Small Intestine	intestine
25	chr11:66580600-66606600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:66580800-66609600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:66581200-66609800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:66583200-66605200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:66583400-66609200	Weak transcription	NH-A	brain
30	chr11:66583800-66605200	Weak transcription	NHEK	skin
31	chr11:66585200-66609000	Weak transcription	HepG2	liver
32	chr11:66586800-66606600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:66588000-66605400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:66588200-66605600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr11:66588600-66605200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:66590200-66605200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:66590600-66609200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:66591000-66605600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:66591600-66606400	Weak transcription	GM12878-XiMat	blood
40	chr11:66594000-66605200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:66594000-66605400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:66594000-66609000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr11:66594200-66603400	Weak transcription	NHLF	lung
44	chr11:66594200-66605200	Weak transcription	Dnd41	blood
45	chr11:66595400-66605400	Weak transcription	Spleen	Spleen
46	chr11:66596000-66607800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:66596200-66605200	Weak transcription	Primary T cells from cord blood	blood
48	chr11:66596200-66605400	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr11:66596200-66609600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr11:66596400-66604800	Weak transcription	Placenta	Placenta

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