Variant report

Variant	rs7124999
Chromosome Location	chr11:17778867-17778868
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10444223	0.89[ASN][1000 genomes]
rs10444224	0.89[ASN][1000 genomes]
rs10766435	0.89[ASN][1000 genomes]
rs11024393	0.89[ASN][1000 genomes]
rs16934680	1.00[ASN][1000 genomes]
rs3893215	1.00[ASN][1000 genomes]
rs56037689	1.00[ASN][1000 genomes]
rs56205256	1.00[ASN][1000 genomes]
rs59267268	1.00[ASN][1000 genomes]
rs6486396	0.89[ASN][1000 genomes]
rs7110441	1.00[ASN][1000 genomes]
rs7114718	1.00[ASN][1000 genomes]
rs7124411	1.00[ASN][1000 genomes]
rs71457882	0.89[ASN][1000 genomes]
rs73424016	1.00[ASN][1000 genomes]
rs7924746	1.00[ASN][1000 genomes]
rs7926535	1.00[ASN][1000 genomes]
rs7942518	0.89[ASN][1000 genomes]
rs917032	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825772	chr11:17723530-17783128	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1038119	chr11:17744915-17794577	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv467718	chr11:17744992-17809724	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv553589	chr11:17744992-17809724	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	esv1793678	chr11:17745099-17786436	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv516767	chr11:17758587-17809724	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17763400-17779600	Weak transcription	Brain Germinal Matrix	brain
2	chr11:17764000-17780000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:17771200-17782200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:17772400-17786800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:17772400-17790600	Weak transcription	Right Atrium	heart
6	chr11:17773400-17795600	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:17774000-17786000	Weak transcription	Gastric	stomach
8	chr11:17774000-17791600	Weak transcription	Pancreas	Pancrea
9	chr11:17776400-17785800	Weak transcription	Brain Angular Gyrus	brain
10	chr11:17776800-17781800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:17777400-17782200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:17778600-17779000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr11:17778800-17779800	Strong transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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