Variant report

Variant	rs7125366
Chromosome Location	chr11:86169260-86169261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86168596..86172615-chr11:86512849..86516301,3	MCF-7	breast:
2	chr11:86168251..86170470-chr11:86280269..86282834,2	MCF-7	breast:
3	chr11:86166230..86170690-chr11:86512399..86515625,4	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11234662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12224723	0.96[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12226269	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1458384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542426	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs17159928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1870323	0.92[CEU][hapmap]
rs4944586	0.88[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs7107136	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs7108710	0.86[ASN][1000 genomes]
rs7119485	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs748102	0.94[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs767776	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7943741	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86136800-86170200	Weak transcription	Fetal Heart	heart
2	chr11:86152400-86172200	Weak transcription	Fetal Brain Male	brain
3	chr11:86153200-86187000	Weak transcription	Fetal Kidney	kidney
4	chr11:86154000-86169600	Weak transcription	HSMM	muscle
5	chr11:86154000-86170800	Weak transcription	Esophagus	oesophagus
6	chr11:86154600-86170600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:86154800-86171000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:86156800-86169400	Weak transcription	Osteobl	bone
9	chr11:86157000-86179800	Weak transcription	Fetal Intestine Large	intestine
10	chr11:86157400-86170800	Weak transcription	Psoas Muscle	Psoas
11	chr11:86158000-86170800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:86158600-86169600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:86158600-86170400	Weak transcription	Brain Anterior Caudate	brain
14	chr11:86158600-86170800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:86158600-86170800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:86158600-86171000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr11:86158600-86171000	Weak transcription	Gastric	stomach
18	chr11:86158600-86187200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:86159200-86170800	Weak transcription	Fetal Intestine Small	intestine
20	chr11:86159600-86170800	Weak transcription	Lung	lung
21	chr11:86159600-86196800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr11:86159800-86172600	Weak transcription	Fetal Brain Female	brain
23	chr11:86160200-86221000	Weak transcription	Primary T cells from cord blood	blood
24	chr11:86160600-86171600	Weak transcription	Brain Germinal Matrix	brain
25	chr11:86160800-86173400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:86161200-86170800	Weak transcription	Brain Angular Gyrus	brain
27	chr11:86161600-86170800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:86161600-86170800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:86162200-86169600	Weak transcription	NHDF-Ad	bronchial
30	chr11:86163000-86172000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:86167000-86172800	Enhancers	HUVEC	blood vessel
32	chr11:86167400-86170200	Enhancers	Fetal Lung	lung
33	chr11:86167400-86170200	Enhancers	Stomach Mucosa	stomach
34	chr11:86167400-86172600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:86167400-86172800	Enhancers	Adipose Nuclei	Adipose
36	chr11:86167400-86172800	Enhancers	Right Atrium	heart
37	chr11:86167600-86169800	Weak transcription	NHEK	skin
38	chr11:86167600-86172200	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr11:86167600-86172200	Enhancers	HMEC	breast
40	chr11:86167800-86169400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr11:86167800-86169400	Weak transcription	Fetal Muscle Leg	muscle
42	chr11:86167800-86169400	Genic enhancers	A549	lung
43	chr11:86167800-86169600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:86167800-86169600	Weak transcription	Colon Smooth Muscle	Colon
45	chr11:86167800-86169800	Weak transcription	NH-A	brain
46	chr11:86167800-86170000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr11:86167800-86170400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr11:86167800-86170800	Weak transcription	Fetal Thymus	thymus
49	chr11:86167800-86170800	Weak transcription	Ovary	ovary
50	chr11:86167800-86171000	Weak transcription	Fetal Stomach	stomach

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