Variant report

Variant	rs7125671
Chromosome Location	chr11:121180883-121180884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121179024..121181756-chr11:121184079..121185753,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58182842	0.82[AFR][1000 genomes]
rs73592762	1.00[AFR][1000 genomes]
rs73592768	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898424	chr11:121108865-121206354	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv898425	chr11:121115206-121215237	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv898426	chr11:121136604-121206354	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121164000-121181400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:121164200-121183000	Weak transcription	Esophagus	oesophagus
3	chr11:121164400-121183000	Weak transcription	Fetal Stomach	stomach
4	chr11:121164800-121182000	Weak transcription	A549	lung
5	chr11:121165000-121189400	Weak transcription	Fetal Intestine Small	intestine
6	chr11:121171600-121181600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:121171600-121181800	Weak transcription	Pancreas	Pancrea
8	chr11:121171600-121182000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:121171600-121189600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:121171800-121190200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:121172600-121182000	Strong transcription	Primary T cells from cord blood	blood
12	chr11:121173200-121181200	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:121173400-121181000	Strong transcription	HSMMtube	muscle
14	chr11:121174000-121181000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:121175000-121181600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:121175400-121181800	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:121175800-121181000	Strong transcription	Stomach Smooth Muscle	stomach
18	chr11:121176200-121190000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:121177800-121183000	Weak transcription	Aorta	Aorta
20	chr11:121178000-121186600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:121178000-121190000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr11:121178200-121181800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:121178200-121185600	Weak transcription	Lung	lung
24	chr11:121178200-121189800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:121178200-121189800	Weak transcription	Fetal Brain Male	brain
26	chr11:121178200-121190200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:121178200-121190200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:121178200-121196400	Weak transcription	Ovary	ovary
29	chr11:121178400-121181400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr11:121178400-121181800	Weak transcription	Thymus	Thymus
31	chr11:121178400-121189800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:121178400-121190000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:121178400-121192400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr11:121178600-121181600	Weak transcription	Fetal Kidney	kidney
35	chr11:121178600-121182000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr11:121178600-121182400	Weak transcription	HUVEC	blood vessel
37	chr11:121178600-121182400	Weak transcription	Osteobl	bone
38	chr11:121178600-121183000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr11:121178600-121183800	Weak transcription	Left Ventricle	heart
40	chr11:121178600-121189400	Weak transcription	Fetal Intestine Large	intestine
41	chr11:121178600-121190200	Weak transcription	NHEK	skin
42	chr11:121178600-121192400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr11:121178600-121192800	Weak transcription	Right Ventricle	heart
44	chr11:121178800-121181000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:121178800-121181600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:121178800-121181600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:121178800-121181600	Weak transcription	Brain Substantia Nigra	brain
48	chr11:121178800-121182400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:121178800-121182800	Weak transcription	Fetal Lung	lung
50	chr11:121178800-121189800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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