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Variant report
Variant
rs7129128
Chromosome Location
chr11:18816245-18816246
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:1)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
YY1
chr11:18816120-18816326
H1-hESC
embryonic stem cell:
n/a
n/a
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr11:18808312..18810971-chr11:18815106..18817235,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
PTPN5
TF binding region
Extended variants information (count: 3 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:2)
rs_ID
r
2
[population]
rs4508188
0.90[ASN][1000 genomes]
rs7108873
0.94[MEX][hapmap]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv553633
chr11:18311701-19058451
Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site
144 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links