Variant report

Variant	rs7129325
Chromosome Location	chr11:77449778-77449779
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLNS1A-2	chr11:77449725-77449975	ENSG00000255409.1

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1045590	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12417115	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12788711	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28653530	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs516529	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55190	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs569072	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs572541	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs585513	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7115444	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7117813	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7118800	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7119332	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7931137	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77394600-77458800	Weak transcription	Small Intestine	intestine
2	chr11:77394800-77462600	Weak transcription	Fetal Heart	heart
3	chr11:77409600-77453400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:77409600-77458800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:77409600-77478200	Weak transcription	Brain Angular Gyrus	brain
6	chr11:77410400-77477600	Weak transcription	Brain Substantia Nigra	brain
7	chr11:77431600-77482400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:77436200-77451400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:77436200-77458600	Weak transcription	HSMMtube	muscle
10	chr11:77436200-77462600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:77436200-77463000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:77436200-77473400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:77436200-77477000	Weak transcription	Colonic Mucosa	Colon
14	chr11:77436600-77450200	Weak transcription	HSMM	muscle
15	chr11:77436600-77473200	Weak transcription	NHDF-Ad	bronchial
16	chr11:77436800-77458600	Weak transcription	NH-A	brain
17	chr11:77441400-77452000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:77442000-77453000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:77442200-77451800	Weak transcription	Fetal Brain Male	brain
20	chr11:77442400-77450200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr11:77442400-77458200	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:77442400-77458400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:77442400-77458400	Weak transcription	NHEK	skin
24	chr11:77442400-77458600	Weak transcription	Psoas Muscle	Psoas
25	chr11:77442400-77458600	Weak transcription	HMEC	breast
26	chr11:77442400-77463600	Weak transcription	Brain Anterior Caudate	brain
27	chr11:77442400-77472600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:77442600-77450200	Weak transcription	HUVEC	blood vessel
29	chr11:77442800-77452400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:77442800-77474600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:77442800-77500200	Weak transcription	Pancreas	Pancrea
32	chr11:77443000-77465800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:77443200-77451000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr11:77443200-77451600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:77443200-77451600	Weak transcription	Hela-S3	cervix
36	chr11:77443200-77452400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:77443200-77473600	Weak transcription	Fetal Brain Female	brain
38	chr11:77443200-77500200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:77443400-77450600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:77443400-77452400	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr11:77443400-77458400	Weak transcription	A549	lung
42	chr11:77443400-77464400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:77443800-77454400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:77443800-77465800	Weak transcription	Brain Germinal Matrix	brain
45	chr11:77444200-77455600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:77444400-77453000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:77444600-77449800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:77444600-77452200	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:77444600-77452600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:77444600-77452600	Strong transcription	Fetal Stomach	stomach

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