Variant report

Variant	rs7129352
Chromosome Location	chr11:35385979-35385980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:35382673..35391138-chr11:35406916..35414742,25	MCF-7	breast:
2	chr11:35256103..35261501-chr11:35384186..35388588,8	MCF-7	breast:
3	chr11:35296358..35301253-chr11:35383072..35388147,10	MCF-7	breast:
4	chr11:35330316..35333880-chr11:35383154..35386545,4	MCF-7	breast:
5	chr11:35281817..35285244-chr11:35384315..35387489,3	MCF-7	breast:
6	chr11:35339447..35341142-chr11:35384783..35386762,2	MCF-7	breast:
7	chr11:35316042..35322702-chr11:35383885..35387953,7	MCF-7	breast:
8	chr11:35342453..35346425-chr11:35381907..35387258,7	MCF-7	breast:
9	chr11:35195238..35197148-chr11:35385944..35388591,2	MCF-7	breast:
10	chr11:35385110..35389283-chr11:35389686..35393364,5	MCF-7	breast:
11	chr11:35385915..35388299-chr11:35402926..35406679,3	MCF-7	breast:
12	chr11:35334087..35336895-chr11:35384207..35386170,2	MCF-7	breast:
13	chr11:35301697..35307899-chr11:35384037..35387970,7	MCF-7	breast:
14	chr11:35342676..35347000-chr11:35384036..35388623,5	MCF-7	breast:
15	chr11:35295515..35301483-chr11:35383053..35389477,19	MCF-7	breast:
16	chr11:35359115..35360850-chr11:35385171..35387976,3	MCF-7	breast:
17	chr11:34959758..34962115-chr11:35384391..35386520,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255004	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7102654	0.85[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv430372	chr11:35376124-35430324	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35383000-35387600	Enhancers	Pancreas	Pancrea
2	chr11:35383400-35387000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:35383800-35388200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:35384000-35386800	Enhancers	Adipose Nuclei	Adipose
5	chr11:35384400-35386000	Enhancers	Brain Angular Gyrus	brain
6	chr11:35384400-35386600	Enhancers	Colon Smooth Muscle	Colon
7	chr11:35384400-35386600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr11:35384400-35386800	Enhancers	Rectal Smooth Muscle	rectum
9	chr11:35384400-35386800	Enhancers	NHLF	lung
10	chr11:35384400-35387000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr11:35384400-35387000	Enhancers	Brain Cingulate Gyrus	brain
12	chr11:35384600-35386000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:35384600-35386400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:35384600-35386400	Enhancers	Fetal Muscle Leg	muscle
15	chr11:35384600-35386600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:35384600-35386600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:35384600-35386600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:35384600-35386600	Enhancers	NH-A	brain
19	chr11:35384600-35386800	Enhancers	Brain Hippocampus Middle	brain
20	chr11:35384600-35386800	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr11:35384800-35386200	Enhancers	Fetal Heart	heart
22	chr11:35384800-35386400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:35384800-35386400	Enhancers	HMEC	breast
24	chr11:35384800-35386600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr11:35384800-35389800	Enhancers	Osteobl	bone
26	chr11:35385000-35386200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:35385000-35386400	Enhancers	Liver	Liver
28	chr11:35385200-35386000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:35385200-35386200	Weak transcription	Brain Substantia Nigra	brain
30	chr11:35385200-35387000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:35385400-35386000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr11:35385400-35386000	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr11:35385400-35386000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:35385400-35386000	Flanking Active TSS	A549	lung
35	chr11:35385400-35386200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:35385400-35386200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr11:35385400-35386200	Enhancers	Fetal Brain Male	brain
38	chr11:35385400-35386200	Enhancers	HepG2	liver
39	chr11:35385400-35386400	Enhancers	Fetal Brain Female	brain
40	chr11:35385400-35388000	Enhancers	Brain Anterior Caudate	brain
41	chr11:35385600-35386200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:35385600-35386200	Enhancers	Fetal Lung	lung
43	chr11:35385600-35386400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:35385600-35386800	Enhancers	HSMMtube	muscle
45	chr11:35385600-35387000	Enhancers	NHDF-Ad	bronchial
46	chr11:35385600-35388200	Enhancers	Lung	lung
47	chr11:35385600-35388200	Weak transcription	Right Ventricle	heart
48	chr11:35385600-35388800	Weak transcription	Aorta	Aorta
49	chr11:35385800-35386000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:35385800-35386000	Enhancers	Hela-S3	cervix

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