Variant report
| Variant | rs7130024 |
|---|---|
| Chromosome Location | chr11:92968311-92968312 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:9)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:9 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RAD21 | chr11:92967629-92968374 | ECC-1 | luminal epithelium: | n/a | n/a |
| 2 | ZNF384 | chr11:92967799-92968334 | K562 | blood: | n/a | n/a |
| 3 | CTCF | chr11:92967595-92968327 | HCT-116 | colon: | n/a | chr11:92967614-92967623 |
| 4 | RAD21 | chr11:92967352-92968739 | SK-N-SH | brain: | n/a | n/a |
| 5 | IRF1 | chr11:92968308-92968430 | K562 | blood: | n/a | n/a |
| 6 | RAD21 | chr11:92967676-92968326 | A549 | lung: | n/a | n/a |
| 7 | SMC3 | chr11:92967646-92968471 | SK-N-SH | brain: | n/a | n/a |
| 8 | CTCF | chr11:92967518-92968643 | SK-N-SH | brain: | n/a | chr11:92967614-92967623 |
| 9 | CTCF | chr11:92967525-92968352 | A549 | lung: | n/a | chr11:92967614-92967623 |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:92967849..92968562-chr11:93381285..93382522,3 | K562 | blood: | |
| 2 | chr11:92967004..92969255-chr11:93384967..93385922,6 | K562 | blood: | |
| 3 | chr11:92967732..92968419-chr11:93276090..93276599,2 | MCF-7 | breast: | |
| 4 | chr11:92966947..92969391-chr11:93461362..93463469,2 | MCF-7 | breast: | |
| 5 | chr11:92967484..92968450-chr11:93381041..93381968,2 | MCF-7 | breast: | |
| 6 | chr11:92967543..92968491-chr11:93381050..93382178,5 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000255233 | TF binding region |
| ENSG00000166002 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs16918691 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16918701 | 0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16918716 | 0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16918719 | 0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55640318 | 0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56324444 | 0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56332495 | 0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56397291 | 0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57657905 | 0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59702828 | 0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60596225 | 0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7107882 | 0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7109408 | 0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7125092 | 0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7128056 | 0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7130025 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7946227 | 0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7951045 | 0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039134 | chr11:92790000-93219942 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv898177 | chr11:92877533-92971874 | Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv436 | chr11:92967000-92985674 | Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv514640 | chr11:92967440-92972784 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv3464353 | chr11:92967896-92972804 | Enhancers Flanking Active TSS Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv3464331 | chr11:92967903-92972689 | Enhancers Flanking Active TSS Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 7 | esv3464342 | chr11:92967919-92972744 | Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 8 | nsv826034 | chr11:92967982-92972677 | Flanking Active TSS Enhancers Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 9 | nsv826035 | chr11:92967982-92972713 | Flanking Active TSS Enhancers Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 10 | esv3464364 | chr11:92968000-92972695 | Enhancers Flanking Active TSS Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 11 | nsv498765 | chr11:92968001-92972695 | Enhancers Flanking Active TSS Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
