Variant report

Variant	rs71308233
Chromosome Location	chr9:103142459-103142460
allele	-/CA/GC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11791637	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11793726	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103134400-103152600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:103140200-103145400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:103141400-103142800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:103141400-103142800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:103141600-103142600	Enhancers	Placenta	Placenta
6	chr9:103141600-103142600	Enhancers	HMEC	breast
7	chr9:103141600-103142600	Enhancers	NH-A	brain
8	chr9:103141600-103142800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:103141600-103142800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:103141600-103142800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:103141600-103142800	Enhancers	HepG2	liver
12	chr9:103141600-103142800	Enhancers	NHEK	skin
13	chr9:103141600-103142800	Enhancers	Osteobl	bone
14	chr9:103141800-103142600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr9:103141800-103142600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:103141800-103142600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:103141800-103142600	Flanking Active TSS	A549	lung
18	chr9:103141800-103142600	Enhancers	HSMM	muscle
19	chr9:103141800-103142800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:103141800-103142800	Enhancers	HSMMtube	muscle
21	chr9:103141800-103142800	Enhancers	NHLF	lung
22	chr9:103142000-103142800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:103142200-103142800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:103142200-103142800	Enhancers	NHDF-Ad	bronchial
25	chr9:103142400-103142800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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