Variant report

Variant	rs7130913
Chromosome Location	chr11:9084101-9084102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9079042..9082011-chr11:9084095..9086895,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10840166	1.00[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap]
rs35036945	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
5	nsv467704	chr11:9059192-9125301	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv553454	chr11:9059192-9125301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
7	nsv467706	chr11:9077652-9114999	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	nsv553455	chr11:9077652-9114999	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7130913	NRIP3	cis	parietal	SCAN
rs7130913	RPL27A	cis	parietal	SCAN
rs7130913	C11orf17	cis	multi-tissue	Pritchard
rs7130913	OR56A1	cis	parietal	SCAN
rs7130913	OR52A1	cis	parietal	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9058400-9099800	Weak transcription	Aorta	Aorta
2	chr11:9069000-9092400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:9070200-9087400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:9070200-9097200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:9070400-9098400	Weak transcription	Colonic Mucosa	Colon
6	chr11:9070600-9087800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:9070600-9091600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:9071200-9087200	Weak transcription	Fetal Brain Male	brain
9	chr11:9075000-9088000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:9075000-9092600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:9075200-9087200	Weak transcription	Pancreas	Pancrea
12	chr11:9076000-9085800	Weak transcription	Placenta	Placenta
13	chr11:9076200-9085800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:9076200-9087000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:9076200-9087200	Weak transcription	HSMM	muscle
16	chr11:9078600-9092800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:9078800-9098000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:9079000-9089600	Weak transcription	Fetal Lung	lung
19	chr11:9079000-9091200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:9079000-9096200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:9079600-9087600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:9079600-9088200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:9079800-9087800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:9081400-9092400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:9081600-9086800	Weak transcription	Fetal Intestine Large	intestine
26	chr11:9081600-9091400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:9082000-9087400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:9082200-9085800	Weak transcription	Lung	lung
29	chr11:9082200-9087200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:9082200-9087800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:9082400-9086800	Weak transcription	Adipose Nuclei	Adipose
32	chr11:9082400-9087200	Weak transcription	Fetal Stomach	stomach
33	chr11:9082400-9088000	Weak transcription	Gastric	stomach
34	chr11:9082600-9087200	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:9084000-9088000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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