Variant report

Variant	rs71309971
Chromosome Location	chr3:56663947-56663948
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:56663551-56663951	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr3:56662753-56664078	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr3:56648967-56664047	K562	blood:	n/a	n/a

Variant related genes	Relation type
FAM208A	TF binding region

rs_ID	r²[population]
rs13093466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13099722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34558590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35995233	1.00[AFR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56640800-56664200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:56640800-56695400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:56644200-56664000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:56644400-56686400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:56644600-56665600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:56644600-56668600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:56644800-56669800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr3:56645400-56667200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:56645400-56705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:56645600-56664800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:56645600-56665800	Strong transcription	Hela-S3	cervix
14	chr3:56646600-56669000	Weak transcription	Small Intestine	intestine
15	chr3:56646800-56673600	Weak transcription	Right Ventricle	heart
16	chr3:56647000-56664000	Strong transcription	Adipose Nuclei	Adipose
17	chr3:56647000-56666800	Weak transcription	Lung	lung
18	chr3:56647000-56672200	Weak transcription	Gastric	stomach
19	chr3:56647200-56664000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr3:56647200-56664000	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr3:56647400-56664000	Strong transcription	Primary T cells from cord blood	blood
22	chr3:56647400-56664200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:56647400-56664400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:56647400-56707400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr3:56647400-56707800	Strong transcription	Fetal Thymus	thymus
26	chr3:56647600-56664200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:56647800-56668400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:56649000-56664000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr3:56649800-56664200	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr3:56650000-56664000	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:56650200-56664000	Strong transcription	Primary hematopoietic stem cells	blood
32	chr3:56650200-56664000	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr3:56650600-56664000	Strong transcription	Dnd41	blood
34	chr3:56651400-56702000	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr3:56652800-56701400	Weak transcription	Psoas Muscle	Psoas
36	chr3:56653400-56664000	Strong transcription	Fetal Lung	lung
37	chr3:56654000-56666200	Weak transcription	Ovary	ovary
38	chr3:56654600-56666800	Weak transcription	Colonic Mucosa	Colon
39	chr3:56654600-56666800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr3:56655000-56666200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:56656200-56683000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:56656400-56664000	Strong transcription	HMEC	breast
43	chr3:56657200-56664000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr3:56657400-56683800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr3:56657600-56675800	Strong transcription	Fetal Muscle Leg	muscle
46	chr3:56657800-56678000	Weak transcription	Fetal Brain Male	brain
47	chr3:56658000-56666800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr3:56658400-56667400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr3:56658400-56668200	Strong transcription	Fetal Muscle Trunk	muscle
50	chr3:56659000-56666600	Weak transcription	Fetal Heart	heart

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