Variant report

Variant	rs71311520
Chromosome Location	chr3:25080372-25080373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:25079124..25081667-chr3:25084641..25087586,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10510557	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25070000-25086600	Weak transcription	Left Ventricle	heart
2	chr3:25074200-25083400	Weak transcription	Right Atrium	heart
3	chr3:25075200-25086600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:25076400-25080400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:25077200-25080400	Enhancers	NHLF	lung
6	chr3:25077800-25081000	Enhancers	Fetal Lung	lung
7	chr3:25077800-25081000	Enhancers	Fetal Stomach	stomach
8	chr3:25078000-25080800	Enhancers	Fetal Kidney	kidney
9	chr3:25078000-25080800	Enhancers	Rectal Smooth Muscle	rectum
10	chr3:25078200-25080600	Enhancers	NH-A	brain
11	chr3:25078200-25081400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr3:25078400-25080600	Enhancers	Colon Smooth Muscle	Colon
13	chr3:25078800-25080600	Enhancers	Osteobl	bone
14	chr3:25079000-25081000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr3:25079200-25080600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:25079200-25080800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:25079200-25080800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr3:25079200-25086600	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:25079400-25080600	Weak transcription	Psoas Muscle	Psoas
20	chr3:25079400-25081000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:25079400-25083400	Weak transcription	Fetal Heart	heart
22	chr3:25079400-25086800	Weak transcription	Aorta	Aorta
23	chr3:25079400-25088400	Weak transcription	Adipose Nuclei	Adipose
24	chr3:25080000-25081000	Enhancers	Brain Anterior Caudate	brain
25	chr3:25080000-25089000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:25080200-25080400	Enhancers	Liver	Liver

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