Variant report

Variant	rs713128
Chromosome Location	chr7:124290622-124290623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10243547	0.85[EUR][1000 genomes]
rs12534746	0.85[EUR][1000 genomes]
rs12669028	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12672500	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12673211	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12706618	0.85[EUR][1000 genomes]
rs13246858	0.85[EUR][1000 genomes]
rs2177651	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34540422	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35922487	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35936075	0.81[EUR][1000 genomes]
rs4352784	0.89[EUR][1000 genomes]
rs4728003	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4731193	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67794080	0.83[EUR][1000 genomes]
rs73221435	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124289600-124292200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links