Variant report

Variant	rs71315874
Chromosome Location	chr3:111033544-111033545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111030932..111033731-chr3:111040332..111041984,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13066977	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1387225	0.81[AFR][1000 genomes]
rs34257885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61333742	0.81[AMR][1000 genomes]
rs979870	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877339	chr3:110889974-111070554	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111028600-111034200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr3:111028800-111034000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:111028800-111034000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:111028800-111034200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:111028800-111034200	Enhancers	Fetal Thymus	thymus
6	chr3:111029000-111034400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:111029000-111034400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr3:111029200-111034000	Enhancers	Primary hematopoietic stem cells	blood
9	chr3:111029200-111034200	Enhancers	Primary T cells from cord blood	blood
10	chr3:111029400-111034200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr3:111029400-111034200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr3:111029400-111034200	Enhancers	Thymus	Thymus
13	chr3:111029800-111035200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:111031000-111033800	Weak transcription	Fetal Intestine Small	intestine
15	chr3:111031000-111034600	Weak transcription	Small Intestine	intestine
16	chr3:111031200-111034200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:111031200-111041800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:111031400-111033600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:111031400-111042600	Enhancers	Dnd41	blood
20	chr3:111031600-111033800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:111032800-111034000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr3:111032800-111034000	Enhancers	Duodenum Mucosa	Duodenum
23	chr3:111032800-111035400	Enhancers	HSMMtube	muscle
24	chr3:111033000-111034200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr3:111033000-111034200	Enhancers	Stomach Mucosa	stomach
26	chr3:111033000-111034400	Enhancers	Fetal Muscle Leg	muscle
27	chr3:111033000-111035200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:111033000-111035400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:111033200-111033600	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr3:111033200-111034200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr3:111033200-111034200	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr3:111033200-111034800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:111033200-111035200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:111033200-111035200	Enhancers	NH-A	brain
35	chr3:111033200-111035600	Enhancers	HSMM	muscle
36	chr3:111033200-111042000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr3:111033400-111033600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:111033400-111033800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:111033400-111034000	Enhancers	Primary T cells fromperipheralblood	blood
40	chr3:111033400-111035200	Enhancers	Fetal Stomach	stomach
41	chr3:111033400-111035600	Enhancers	Fetal Lung	lung

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