Variant report

Variant	rs71323190
Chromosome Location	chr3:43360244-43360245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43358290..43360924-chr3:43368832..43371042,2	MCF-7	breast:
2	chr3:43359634..43362364-chr3:43362365..43365194,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12630983	0.84[ASN][1000 genomes]
rs13086456	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13087059	1.00[AFR][1000 genomes]
rs57684209	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv876732	chr3:43326887-43360879	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43332400-43361600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:43332800-43377000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:43340200-43361200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:43340600-43365600	Weak transcription	Esophagus	oesophagus
5	chr3:43345000-43368200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:43345400-43367400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:43345600-43364400	Weak transcription	HMEC	breast
8	chr3:43346000-43377000	Weak transcription	K562	blood
9	chr3:43346400-43367200	Weak transcription	Fetal Lung	lung
10	chr3:43348400-43378800	Weak transcription	Hela-S3	cervix
11	chr3:43349600-43363200	Weak transcription	GM12878-XiMat	blood
12	chr3:43350000-43367400	Weak transcription	Aorta	Aorta
13	chr3:43350400-43361000	Weak transcription	Fetal Brain Female	brain
14	chr3:43350400-43365800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:43351000-43375600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:43352600-43363200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr3:43353000-43361600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr3:43353000-43374000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:43353200-43367400	Weak transcription	Dnd41	blood
20	chr3:43353400-43375200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:43354400-43369600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:43355000-43364600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:43355800-43360400	Genic enhancers	HUVEC	blood vessel
24	chr3:43356000-43362200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr3:43356000-43362200	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr3:43356200-43362800	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr3:43356400-43362000	Genic enhancers	Primary T cells fromperipheralblood	blood
28	chr3:43356400-43363600	Enhancers	Adipose Nuclei	Adipose
29	chr3:43356600-43363600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
30	chr3:43357000-43360600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr3:43357800-43363600	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr3:43358200-43360400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr3:43358200-43360400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr3:43358200-43360600	Enhancers	Psoas Muscle	Psoas
35	chr3:43358200-43361200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:43358200-43361200	Enhancers	Lung	lung
37	chr3:43358200-43361200	Enhancers	Pancreas	Pancrea
38	chr3:43358200-43361400	Genic enhancers	Thymus	Thymus
39	chr3:43358200-43362000	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr3:43358400-43360400	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr3:43358400-43361000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr3:43359000-43361400	Enhancers	Right Atrium	heart
43	chr3:43359000-43362200	Genic enhancers	Primary T cells from cord blood	blood
44	chr3:43359200-43360800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr3:43359200-43360800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr3:43359200-43362000	Enhancers	Ovary	ovary
47	chr3:43359200-43367000	Weak transcription	Colon Smooth Muscle	Colon
48	chr3:43359400-43360400	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr3:43359400-43361200	Enhancers	Left Ventricle	heart
50	chr3:43359400-43361400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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