Variant report

Variant	rs7132668
Chromosome Location	chr12:48405860-48405861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr12:48405741-48406429	T-47D	breast:	n/a	n/a
2	JUND	chr12:48405780-48406502	T-47D	breast:	n/a	chr12:48406165-48406172
3	JUND	chr12:48405817-48406457	T-47D	breast:	n/a	chr12:48406165-48406172

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:48401338..48404101-chr12:48405666..48408506,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM106C-1	chr12:48405830-48405950	XLOC_009733

Variant related genes	Relation type
ENSG00000258203	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1018973	0.91[EUR][1000 genomes]
rs10783226	0.87[EUR][1000 genomes]
rs10783227	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11612578	0.94[EUR][1000 genomes]
rs11612970	0.84[EUR][1000 genomes]
rs11613485	0.83[EUR][1000 genomes]
rs12580764	0.85[EUR][1000 genomes]
rs1635526	0.85[EUR][1000 genomes]
rs1635528	0.81[ASN][1000 genomes]
rs1635529	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17122611	0.85[EUR][1000 genomes]
rs17122612	0.85[EUR][1000 genomes]
rs17122613	0.83[EUR][1000 genomes]
rs1793931	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1793933	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1793955	0.83[EUR][1000 genomes]
rs1859441	0.93[EUR][1000 genomes]
rs1859444	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1990029	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2286022	0.88[EUR][1000 genomes]
rs3742074	0.85[EUR][1000 genomes]
rs3803183	0.92[EUR][1000 genomes]
rs3803184	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3825404	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4293182	0.83[EUR][1000 genomes]
rs4760611	0.90[EUR][1000 genomes]
rs4760614	0.91[EUR][1000 genomes]
rs4760615	0.92[EUR][1000 genomes]
rs4760618	0.90[EUR][1000 genomes]
rs4760677	0.91[EUR][1000 genomes]
rs57380031	0.83[EUR][1000 genomes]
rs59766465	0.84[EUR][1000 genomes]
rs60629297	0.84[EUR][1000 genomes]
rs60681522	0.85[EUR][1000 genomes]
rs6580647	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6580649	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6580651	0.91[EUR][1000 genomes]
rs7133249	0.85[EUR][1000 genomes]
rs72644841	0.94[EUR][1000 genomes]
rs72644842	0.91[EUR][1000 genomes]
rs72644843	0.85[EUR][1000 genomes]
rs72644844	0.85[EUR][1000 genomes]
rs7305954	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7310579	0.92[EUR][1000 genomes]
rs7957764	0.92[EUR][1000 genomes]
rs7959755	0.91[EUR][1000 genomes]
rs7967762	0.90[EUR][1000 genomes]
rs7971668	0.85[EUR][1000 genomes]
rs9651993	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9805048	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832401	chr12:48347453-48477999	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7132668	ZNF641	cis	Whole Blood	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48399400-48415000	Weak transcription	Right Atrium	heart
2	chr12:48403000-48410200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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