Variant report

Variant	rs71327070
Chromosome Location	chr3:46524035-46524036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13064957	0.81[ASN][1000 genomes]
rs13069424	0.86[ASN][1000 genomes]
rs34003820	0.81[ASN][1000 genomes]
rs34827868	0.81[ASN][1000 genomes]
rs34927844	0.81[ASN][1000 genomes]
rs4547741	0.81[ASN][1000 genomes]
rs5015750	0.81[ASN][1000 genomes]
rs66826527	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67228693	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs68095529	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73067779	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1009892	chr3:46496775-46546918	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv536553	chr3:46496775-46546918	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46511800-46530200	Weak transcription	Right Atrium	heart
2	chr3:46513400-46525800	Weak transcription	Left Ventricle	heart
3	chr3:46521800-46524400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:46522400-46527400	Enhancers	HSMM	muscle
5	chr3:46522800-46524600	Weak transcription	Pancreas	Pancrea
6	chr3:46522800-46524600	Weak transcription	Spleen	Spleen
7	chr3:46522800-46530200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:46522800-46530400	Weak transcription	Gastric	stomach
9	chr3:46523200-46524400	Weak transcription	Fetal Intestine Large	intestine
10	chr3:46523200-46524600	Weak transcription	Fetal Intestine Small	intestine
11	chr3:46523400-46525200	Enhancers	NHEK	skin
12	chr3:46523400-46526000	Weak transcription	HSMMtube	muscle
13	chr3:46523400-46529400	Weak transcription	Brain Substantia Nigra	brain
14	chr3:46523600-46526200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:46523800-46524800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:46524000-46524400	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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