Variant report

Variant	rs7132789
Chromosome Location	chr12:122783393-122783394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11057290	0.86[EUR][1000 genomes]
rs11061368	0.86[EUR][1000 genomes]
rs11836373	0.86[EUR][1000 genomes]
rs12580043	0.91[EUR][1000 genomes]
rs1882581	0.91[EUR][1000 genomes]
rs2089887	0.91[EUR][1000 genomes]
rs35422129	0.86[EUR][1000 genomes]
rs58134429	0.91[EUR][1000 genomes]
rs60995900	0.86[EUR][1000 genomes]
rs61954363	0.86[EUR][1000 genomes]
rs61954365	0.84[EUR][1000 genomes]
rs61954366	0.88[EUR][1000 genomes]
rs61954367	0.91[EUR][1000 genomes]
rs61954368	0.88[EUR][1000 genomes]
rs61954369	0.91[EUR][1000 genomes]
rs61954370	0.91[EUR][1000 genomes]
rs61954371	0.88[EUR][1000 genomes]
rs61954374	0.91[EUR][1000 genomes]
rs61954376	0.91[EUR][1000 genomes]
rs61954377	0.91[EUR][1000 genomes]
rs61954378	0.88[EUR][1000 genomes]
rs61954381	0.91[EUR][1000 genomes]
rs61954382	0.95[EUR][1000 genomes]
rs61954383	0.95[EUR][1000 genomes]
rs61954393	0.95[EUR][1000 genomes]
rs61954394	0.95[EUR][1000 genomes]
rs61954395	0.95[EUR][1000 genomes]
rs61954397	0.93[EUR][1000 genomes]
rs61955588	0.84[EUR][1000 genomes]
rs61955589	0.84[EUR][1000 genomes]
rs7303975	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7311354	0.91[EUR][1000 genomes]
rs7953290	0.91[EUR][1000 genomes]
rs7964780	0.91[EUR][1000 genomes]
rs7968764	0.91[EUR][1000 genomes]
rs907485	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122751600-122803400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:122752000-122800600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:122752000-122802600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:122752400-122810400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr12:122754600-122822400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr12:122760200-122790400	Strong transcription	Placenta	Placenta
7	chr12:122763600-122785200	Weak transcription	Brain Hippocampus Middle	brain
8	chr12:122763600-122785400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr12:122763600-122785400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr12:122763600-122787400	Weak transcription	Brain Angular Gyrus	brain
11	chr12:122763600-122792600	Weak transcription	Thymus	Thymus
12	chr12:122763600-122792800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr12:122763600-122812000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:122765600-122789800	Weak transcription	NHEK	skin
15	chr12:122765800-122803400	Weak transcription	K562	blood
16	chr12:122767000-122790000	Weak transcription	HMEC	breast
17	chr12:122770200-122821600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr12:122770400-122821800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:122775600-122800600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr12:122775600-122833600	Strong transcription	Liver	Liver
21	chr12:122775800-122791600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr12:122776000-122822200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr12:122778000-122808800	Weak transcription	Fetal Heart	heart
24	chr12:122778400-122792200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr12:122778600-122785400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr12:122778800-122786600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr12:122779000-122784800	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr12:122779000-122784800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr12:122779000-122791400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr12:122779000-122794200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr12:122779200-122784200	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr12:122779200-122785000	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr12:122779400-122795400	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr12:122779800-122783600	Strong transcription	Primary B cells from cord blood	blood
35	chr12:122779800-122784000	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr12:122779800-122784000	Strong transcription	A549	lung
37	chr12:122779800-122784200	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr12:122779800-122784200	Strong transcription	HSMMtube	muscle
39	chr12:122779800-122785000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr12:122779800-122785600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr12:122779800-122788800	Strong transcription	HSMM	muscle
42	chr12:122780000-122783800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr12:122780000-122784200	Strong transcription	Stomach Smooth Muscle	stomach
44	chr12:122780000-122784400	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr12:122780000-122794800	Strong transcription	Adipose Nuclei	Adipose
46	chr12:122780000-122827200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr12:122780200-122784000	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr12:122780200-122784800	Strong transcription	Primary hematopoietic stem cells	blood
49	chr12:122780400-122784000	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr12:122780400-122799200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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