Variant report

Variant	rs7132898
Chromosome Location	chr12:48564690-48564691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:48515800..48518794-chr12:48562400..48565355,2	K562	blood:

Variant related genes	Relation type
ENSG00000152556	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1049392	0.83[ASN][1000 genomes]
rs10875752	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10875754	0.94[ASN][1000 genomes]
rs10875759	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10875761	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10875765	0.92[ASN][1000 genomes]
rs10875766	0.84[ASN][1000 genomes]
rs11168412	0.83[ASN][1000 genomes]
rs11168417	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11168419	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11168424	0.85[ASN][1000 genomes]
rs11168434	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11168435	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11168438	0.98[ASN][1000 genomes]
rs11168439	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11168442	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11168443	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11168444	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11168445	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11168446	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11168447	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11168448	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11168453	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11168454	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12228924	0.83[ASN][1000 genomes]
rs12425679	0.86[ASN][1000 genomes]
rs2171643	0.89[ASN][1000 genomes]
rs2286020	0.86[ASN][1000 genomes]
rs56097189	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57430775	0.86[ASN][1000 genomes]
rs58540891	0.83[ASN][1000 genomes]
rs58556309	0.86[ASN][1000 genomes]
rs59537300	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6580658	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs66507954	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7133274	0.91[ASN][1000 genomes]
rs7136243	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7136782	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7136788	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7302354	0.83[ASN][1000 genomes]
rs73104071	0.83[ASN][1000 genomes]
rs73105950	0.91[ASN][1000 genomes]
rs73304926	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7484942	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7962390	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7962569	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8181670	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758307	chr12:48429702-48825499	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759898	chr12:48429702-48825499	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv508673	chr12:48489786-48567138	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv8971	chr12:48536526-48758501	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	esv34439	chr12:48541757-48779562	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	esv2757502	chr12:48547128-48779562	Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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