Variant report

Variant	rs7133233
Chromosome Location	chr12:103694978-103694979
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17033659	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17033662	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7295291	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7300758	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73185850	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73185851	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73185853	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73185855	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73185857	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73185858	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7956028	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7961837	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs883064	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455703	chr12:103692799-103818049	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv560037	chr12:103692799-103818049	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103694200-103698600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr12:103694400-103696400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:103694800-103695200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr12:103694800-103695400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:103694800-103695600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr12:103694800-103697000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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